SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9978

Length: 305 nt

UniGene Fasta

>biog3_v1.0_unigene9978
GCAGAGAGGTACGATCCTACTAATCAGAGATGGGAACGGCTGCCTGATATGAATAAGAAGAGAAGTCTCTGCTCTGGATGCTACATGGATGGTAAGTTCTATGTTATTGGAGGGACAGGAGATAATGGGGATCTCACCTGTGGTGAAGTCTATGATTCTGATAAGAGAACCTGGGAAATTATTGAAAACATGAAACCGTCTGGGCCTAGAGATGCAGTTACTCAGGCTCCACCTCTTATAGCTGTTGCAAACAACGAGCTCTATGCTCTGGAGGCCTCAACGAATCAGCTACAAGTTTACACATT

Ace file of the UniGene biog3_v1.0_unigene9978

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25857	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	F-box family protein n=1 Tax=Populus trichocarpa RepID=B9GJS6_POPTR	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	f-box family protein	-	-	66%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	6-phosphogluconate-binding site	IPR006184	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3	RINT-1/TIP-1	IPR007528	-	-
Sma3	Kelch repeat type 2	IPR011498	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 101 - 432

Fln protein: AERYDPTNQRWERLPDMNKKRSLCSGCYMDGKFYVIGGTGDNGDLTCGEVYDSDKRTWEIIENMKPSGPRDAVTQAPPLIAVANNELYALEASTNQLQVYT

Protein Length: 102

Fln nts: GCAGAGAGGTACGATCCTACTAATCAGAGATGGGAACGGCTGCCTGATATGAATAAGAAGAGAAGTCTCTGCTCTGGATGCTACATGGATGGTAAGTTCTATGTTATTGGAGGGACAGGAGATAATGGGGATCTCACCTGTGGTGAAGTCTATGATTCTGATAAGAGAACCTGGGAAATTATTGAAAACATGAAACCGTCTGGGCCTAGAGATGCAGTTACTCAGGCTCCACCTCTTATAGCTGTTGCAAACAACGAGCTCTATGCTCTGGAGGCCTCAACGAATCAGCTACAAGTTTACACATT

Fln Alignment:

Contig9978___AERYDPTNQRWERLPDMNKKRSLCSGCYMDGKFYVIGG-TGDNGDLTCGEVYDSDKRTWEIIENMKPSGPRDAVTQAPPLIAVANNELYALEASTNQLQVY
B8LQD3_________________AELYNSELGTWETLPDMHSPRKLCSGFFMDGKFYVIGGMSSPTVSLTCGEEYNLQTRTWRRIRDMFPGGNR--ATHAPPLVAVVNNQLYAVEYSRNEVKKY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain