SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9967

Length: 506 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9967
GGGGTTTATAAAACTCTTGTAAAGTATCTGGTTGGAGTCCCAGAGGTATTGTTGGACTTTGTGCGGCAGATAAATGACCACCATGGGCCAATGGAAGAACAAAGACAACGATATGGACCTCCTCTTTACCAACTTACCAATATGGCTATCTCTATTCAAATATTTTTGAAGATGTGGTGGAGACATTTTGATGAAATCAAGCTGTCCAAGGATGATCTTCTTTCACTTGTTGCGCAGTCAATACATGTATATGGCTCTGAATTTAAGCGCTTTCTGGTTTTTCTTGGGGACGTCTTTGAAAACTCACCGTTTTTAATACCTGCAGAAGAAGCTGGTGCTGCAGAACTAAACCAGTCTGATGATTTCAAGGAAGCAGTAATTCCTGCAGGGAAAACACACGAGGTTCAATTGACAGTTGATTCAGTGAACTCCTATATTGCTTGGGACTTCAAATACATCAGGAAAGGATGTAGGATTTTGTTTGGAGTTAATAAGCCAATCACATT

Ace file of the UniGene biog3_v1.0_unigene9967 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3023	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	57%
Blast2go	uncharacterized protein	-	-	75%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-
Sma3	GOLD	IPR009038	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5DB58

Fln msg: Distance to subject end: 60 aas, your sequence is shorter than subject: 168 - 432

Fln protein: GVYKTLVKYLVGVPEVLLDFVRQINDHHGPMEEQRQRYGPPLYQLTNMAISIQIFLKMWWRHFDEIKLSKDDLLSLVAQSIHVYGSEFKRFLVFLGDVFENSPFLIPAEEAGAAELNQSDDFKEAVIPAGKTHEVQLTVDSVNSYIAWDFKYIRKGCRILFGVNKPIT

Protein Length: 169

Fln nts: GGGGTTTATAAAACTCTTGTAAAGTATCTGGTTGGAGTCCCAGAGGTATTGTTGGACTTTGTGCGGCAGATAAATGACCACCATGGGCCAATGGAAGAACAAAGACAACGATATGGACCTCCTCTTTACCAACTTACCAATATGGCTATCTCTATTCAAATATTTTTGAAGATGTGGTGGAGACATTTTGATGAAATCAAGCTGTCCAAGGATGATCTTCTTTCACTTGTTGCGCAGTCAATACATGTATATGGCTCTGAATTTAAGCGCTTTCTGGTTTTTCTTGGGGACGTCTTTGAAAACTCACCGTTTTTAATACCTGCAGAAGAAGCTGGTGCTGCAGAACTAAACCAGTCTGATGATTTCAAGGAAGCAGTAATTCCTGCAGGGAAAACACACGAGGTTCAATTGACAGTTGATTCAGTGAACTCCTATATTGCTTGGGACTTCAAATACATCAGGAAAGGATGTAGGATTTTGTTTGGAGTTAATAAGCCAATCACATT

Fln Alignment:

Contig9967___GVYKTLVKYLVGVPEVLLDFVRQINDHHGPMEEQRQRYGPPLYQLTNMAISIQIFLKMWWRHFDEIKLSKDDLLSLVAQSIHVYGSEFKRFLVFLGDVFENSPFLIPAEEAGAAELNQSDDFKEAVIPAGKTHEVQLTVDSVNSYIAWDFKYIRKGCRILFGVNKPIT
C5DB58_________________GVYKTLVKYLVGVPQVLLDFIRQLNDDEGPMEEQRQRYGPPLYSLTTLVLSIRLFLFLSWRRFEARKLTKEQ-LTVLGQAVDVYTSEFERFIKFISEVFANSPFFISAEDAGPIEARKNDEYKEISIPAGKTHEVSLMVESINSYIAWDFSLAQGKMNVDIGFSMEYT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain