SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9962

Length: 1607 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9962

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15429	102/105
SustainPine v2.0	sp_v2.0_unigene62813	3/105

Source	Descriptions	Term	Type	Identity
AutoFact	glyceraldehyde-3-phosphate dehydrogenase B subunit [Glycine max]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	glyceraldehyde-3-phosphate dehydrogenase	-	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQB6

Fln msg:

Fln protein: MTLASSSPAAAIIAAAPACTPAAARSSSLTQSLPSTFKRVEISEFAGLKSTSGCITYGRQARENNLSLFDALASQVVAKAGNSGAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKESPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKVIDKETISVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYSDEVSNIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGVSAEDVNAAFRNAANGPLKGILAVCDVPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKWPGAGKGGSGDPLDDFCKTNPATDECRVYEA*

Protein Length: 462

Fln nts: AATGTATACATAACATCAACCCCCAGCCAGCACTGTTGAAGGAGAGGGATAAGG_-_ATGACTCTCGCTTCATCCTCACCAGCTGCTGCCATCATAGCAGCGGCTCCTGCGTGTACTCCAGCAGCTGCCAGATCCTCCTCTTTGACCCAATCACTTCCCTCCACCTTCAAGAGGGTTGAAATATCAGAGTTTGCGGGGCTGAAGTCGACTTCTGGCTGCATCACATATGGAAGACAAGCACGGGAGAACAACCTCAGCCTCTTTGATGCACTTGCCTCTCAGGTTGTAGCTAAGGCTGGAAATTCTGGAGCTGTTAGGGGAGAAACAGTGGCGAAGTTGAAAGTGGCTATTAATGGATTTGGGCGCATTGGACGCAATTTTCTTCGTTGCTGGCATGGCCGCAAGGAGTCACCTCTTGAAGTAGTTGTAGTTAATGACAGTGGCGGTGTAAAAAATGCTTCTCATCTTCTGAAATATGATTCAATGCTGGGAACTTTTAAAGCTGATGTGAAGGTAATAGATAAGGAAACTATAAGCGTGGATGGGAAACCCATTCTCGTTGTTTCGAGCAGAGACCCCCTCAAATTGCCATGGGCGGAGCTTGGTATCGACATTGTCATCGAGGGTACTGGAGTGTTTGTGGACGGACCCGGGGCAGGGAAGCACATCCAGGCCGGGGCAAAGAAGGTGATCATTACAGCTCCTGCCAAAGGCGCAGATATTCCAACCTATGTTGTTGGAGTCAATGAAGGAGACTACTCTGACGAGGTCTCCAACATTGTTAGCAATGCCTCTTGCACAACAAACTGCCTTGCTCCATTCGTCAAGGTCCTGGATGAAGAGTTCGGCATTGTAAAAGGGACTATGACAACAACCCACTCATACACCGGCGATCAGAGACTGCTGGATGCATCGCACCGTGATTTGAGAAGAGCACGGGCGGCGGCGCTGAACATAGTTCCAACTACTACAGGTGCAGCTAAGGCGGTATCTCTAGTGTTGCCACAGCTCAAGGGGAAGCTGAATGGCATTGCTCTGCGTGTGCCCACTCCCAACGTCTCGGTTGTGGACTTGGTGGTCAACGTTGAGAAGAAAGGAGTCTCTGCGGAAGATGTGAACGCTGCCTTCAGGAATGCTGCCAATGGACCCCTCAAAGGAATTCTTGCAGTGTGTGATGTTCCCCTCGTGTCCGTGGACTTCCGCTGTTCAGATGTTTCCTCCACAGTGGATTCTTCTCTCACCATGGTAATGGGAGATGACATGGTTAAAGTGGTAGCTTGGTACGACAACGAATGGGGTTACAGCCAAAGAGTTGTAGATCTTGCACACTTGGTGGCAGCCAAATGGCCAGGGGCTGGTAAGGGTGGCAGCGGTGACCCTCTCGATGACTTCTGCAAGACCAATCCAGCAACGGATGAATGCCGAGTATACGAAGCTTAA___TTTTTCTGCAACACACGACCAAATCGCTGCATTCTTTTTTTTCAGGGTCAACATTTTGTGGATAACAAGGTAGGGTTGGCGGGCTCGTCTTTCAACCAAAGGGCTTCAGCCGACGCTCATCTTTGTAGTGACTTGTCCTGCAAAACTAGAAAACGAGAGCAAGAACAAAC

Fln Alignment:

Contig9962___LTQSLPSTFKRVEISEFAGLKSTSGCITYGRQARENNLSLFDALASQVVAKAGNSGAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKESPLEVVVVNDSGGVKNASHLLKYDSMLGTFKADVKVIDKETISVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYSDEVSNIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTTTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXXXXXXSAEDVNAAFRNAANGPLKGILAVCDVPLVSVDFRCXXXXXXXXXXXXXXXGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKWPGAGKGGSGDPLDDFCKTNPATDECRVYEA
C0PQB6_________________LTQSLPSTFKRVEISEFAGLKSTSGCITYGRQARENNLNLFDALASQVVAKAGNSGAIKGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVVVNDSGGVKNASHLLKYDSMLGTFKANVKVVDNKTISVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGARKVIITAPAKGADIPTYVVGVNEGDYSDEVSNIVSNASCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVEKKGISAEDVNAAFRSAADGPLKGILAVCDVPLVSVDFRCSDVSSTVDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKWPGAGKGGSDDPLDEFCKTNPATDECRVYEA

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
253	20	80			0.995493
256		80		20	0.995493
283	16			83	0.994512
284	16		83		0.994512
286	83		16		0.994512
287			83	16	0.994512
356		12		75	0.975346
485		80		20	0.999996
574		70	10	10	0.922578
575		80		20	0.999996
612	10			90	0.90298
672	14	85			0.993533
674	14		85		0.993533
675			85	14	0.993533
676			85	14	0.993533
685			87	12	0.992554
709	88			11	0.923564
711			88	11	0.923564
807	11		88		0.923564
809	11	88			0.923564
877	10	90			0.90298
1004		90		10	0.90298
1092	90	10			0.90298
1094			90	10	0.90298
1095			90	10	0.90298
1147	10	90			0.90298
1148		90		10	0.90298
1260	8			92	0.999718
1261		8	88	4	0.999262
1262	8		91		0.999766
1440		10		90	0.90298
1441	10			90	0.90298
1442	10			90	0.90298
1443		10		90	0.90298
1444	11	88			0.923564
1446			88	11	0.923564
1474	33			66	0.997452
1475		33		66	0.997452
1476	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain