SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9928

Length: 224 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9928
CTCAGACAATAGTAATTCACCTGATTGACTATGAAGAGAAAACTACTCCAACTGAGAGTGTTAAAATAATAATGCAACCAAAAGCAGGAAGGTCAGGACTTCCTGAATTGTATTCTGCTGAGATTGATATCCATTCTCAGTTGCCTTTGATTAAAGAGTTTGCACTGAACTACATTTGGACATTTTGTGTTTGGAGTGCTTTGACATTCTACTTTTTTGACATT

Ace file of the UniGene biog3_v1.0_unigene9928 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8338	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative adipose-regulatory protein (Seipin) [Arabidopsis thaliana] dbj\|BAB09613.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED92296.1\| Putative adipose-regulatory protein (Seipin) [Arabidopsis thaliana]	-	-	2.0e-33	43%
FL-Next	tr=Putative uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	40%
Blast2go	adipose-regulatory protein	-	-	1.80768e-42	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid	GO:0009536	Cellular Component	1.80768e-42	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Adipose-regulatory protein, Seipin	IPR009617	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C6TCJ4

Fln msg: Distance to subject end: 108 aas, your sequence is shorter than subject: 74 - 445

Fln protein: QTIVIHLIDYEEKTTPTESVKIIMQPKAGRSGLPELYSAEIDIHSQLPLIKEFALNYIWTFCVWSALTFYFFDI

Protein Length: 75

Fln nts: CTCAGACAATAGTAATTCACCTGATTGACTATGAAGAGAAAACTACTCCAACTGAGAGTGTTAAAATAATAATGCAACCAAAAGCAGGAAGGTCAGGACTTCCTGAATTGTATTCTGCTGAGATTGATATCCATTCTCAGTTGCCTTTGATTAAAGAGTTTGCACTGAACTACATTTGGACATTTTGTGTTTGGAGTGCTTTGACATTCTACTTTTTTGACATT

Fln Alignment:

Contig9928___QTIVIHLIDYEEKTTPTESVKIIMQPKAGRSGLPELYSAEIDIHSQLPLIKEFALNYIWTFCVWSALTFY
C6TCJ4_________________QNINVDILKHKEDYRRSNSIRVTLHPRAGTSSLPQLYEAKIAINSHLPWTKELVRNWKWTFYVWVSLYVY

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
49	75			25	0.996473
50	75			25	0.996473
52		25	75		0.996473
53		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain