SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9927

Length: 927 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9927

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14142	27/27

Source	Descriptions	Term	Type	Identity
AutoFact	PREG-like protein (Fragment) n=1 Tax=Picea mariana RepID=O65065_PICMA	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	80%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclin PHO80-like	IPR013922	-	0.0	-
Sma3	Cyclin P/U	IPR012389	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
252	14	85			0.993533
253	14			85	0.993533
256		85		14	0.993533
257		85		14	0.993533
279	85			14	0.993533
377	12			87	0.992554
378	12	87			0.992554
380		87	12		0.992554
381			87	12	0.992554
417	88			11	0.923564
436	90		10		0.90298
513	20			80	0.999996
519	80			20	0.999996
588	12	87			0.992554
646	10	90			0.90298
667	88			11	0.923564
699	16	83			0.994512
700		80		20	0.995493
788	25			75	0.996473
789		75		25	0.996473
790		75	25		0.996473
791		75		25	0.996473
834	25			75	0.996473
835		25		75	0.996473
837	75			25	0.996473
838			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain