SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9905

Length: 885 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9905

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2116	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	protein transport protein SEC23 [Arabidopsis thaliana] dbj\|BAB02785.1\| protein transport protein Sec23 [Arabidopsis thaliana] gb\|AAO22730.1\| putative transport protein [Arabidopsis thaliana] gb\|AAO50656.1\| putative transport protein [Arabidopsis thaliana]	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Zea mays (Maize).	-	-	82%
Blast2go	protein transport protein sec23	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	83%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	83%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	83%
Blast2go	transporter activity	GO:0005215	Molecular Function	83%
Blast2go	COPII vesicle coat	GO:0030127	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Sec23/Sec24 beta-sandwich	IPR012990	-	-
Sma3	Sec23/Sec24, helical domain	IPR006900	-	-
Sma3	Sec23/Sec24, trunk domain	IPR006896	-	-
Sma3	Zinc finger, Sec23/Sec24-type	IPR006895	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B4F918

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 265 - 417

Fln protein: NYKDMGGGQCNY*GTCSRI*PGGCCCCDG*ASFF*METEEEFNATRWLDRCLIRVCSRFGDYRKDDVTSFSLNSSFAILPQFIFNLRRSQFVQVFNNSPDETAYFRMLLNRENVNNSVVMIQPSLISYSFNAPPEPALLDVASISADRILLLDAYFSVVVFHGMTIAQWRNMGYHNQPEHQAFAQLLQAPHDDAQAIITERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSANEAPPGGDIIFTDDVSLQVFVEHLQRLAVQS*

Protein Length: 266

Fln nts: AATTACAAGGACATGGGTGGAGGGCAGTGCAACTACTGAGGAACTTGTAGCAGGATTTGACCAGGAGGCTGCTGCTGTTGTGATGGCTAGGCAAGCTTCTTTTAAATGGAGACAGAGGAAGAGTTTAATGCAACAAGATGGTTAGACAGGTGTCTAATTCGTGTGTGTTCGAGATTTGGTGATTACCGAAAGGATGATGTCACTTCATTCAGCTTGAACTCAAGTTTTGCAATATTGCCACAATTCATATTCAATCTTAGACGTTCTCAGTTTGTACAGGTTTTTAATAATAGCCCAGATGAGACAGCTTACTTCCGCATGTTACTGAATAGGGAGAATGTCAACAATTCTGTAGTTATGATCCAGCCATCGCTGATTTCTTATTCTTTCAATGCACCTCCTGAGCCAGCACTGCTAGATGTGGCTTCTATTTCAGCAGATCGTATACTTTTGCTGGATGCCTACTTCAGTGTTGTTGTCTTTCATGGTATGACTATTGCTCAGTGGCGCAATATGGGCTATCATAACCAACCAGAGCATCAGGCATTTGCTCAATTGTTGCAAGCACCTCATGATGATGCACAGGCTATAATCACGGAACGATTTCCTGTACCTAGACTGGTTGTCTGTGATCAACATGGATCACAGGCACGTTTTTTGCTTGCTAAGTTGAATCCATCAGCAACATATAACTCGGCTAATGAGGCACCTCCTGGAGGAGACATAATCTTCACAGATGATGTGAGTTTGCAAGTATTTGTCGAGCATCTTCAACGGCTAGCTGTGCAATCTTGA___TATTTGTAAACCAAATTCTGCAAGGACAGTGGCTGCTGTCAATCAATTTTCAGTTTTCATTGAGTTGGTTACAAGGATCCAGATTACATT

Fln Alignment:

Contig9905___F*METEEEFNATRWLDRCLIRVCSRFGDYRKDDVTSFSLNSSFAILPQFIFNLRRSQFVQVFNNSPDETAYFRMLLNRENVNNSVVMIQPSLISYSFNAPPEPALLDVASISADRILLLDAYFSVVVFHGMTIAQWRNMGYHNQPEHQAFAQLLQAPHDDAQAIITERFPVPRLVVCDQHGSQARFLLAKLNPSATYNSANEAPPGGDIIFTDDVSLQVFVEHLQRLAVQS
B4F918_________________FKMEMEEEFDATRWLDRSLIRLCSRFGDYRKDDPSSFSLHSNFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNRESITNSVAMIQPSLISFSFDSPPSPVFLDVASLAADRILLLDAYFSVVIFHGMTIAQWRNMGYQNQPEHEQFAQLLQAPHEDAQMIIKGRFPVPRLVVCDQHGSQARFLLAKLNPSATYNSAHDVAPGSDIIFTDDVSFLVFCEHLQRLAVQS

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
156		60		40	1.0
200		20		80	0.995493
201	20		80		0.995493
203		75		25	0.996473
309	16		83		0.994512
324	20			80	0.995493
325		20		80	0.995493
327		80		20	0.995493
351	25			75	0.996473
353	25			75	0.996473
354			75	25	0.996473
885	33	66			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain