SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9896

Length: 1532 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9896

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17213	17/162
SustainPine v2.0	sp_v2.0_unigene17599	120/162
SustainPine v2.0	sp_v2.0_unigene61638	24/162
SustainPine v2.0	sp_v2.0_unigene78323	1/162

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9S0Z5_RICCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	pyruvate dehydrogenase e1 component subunit beta	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube development	GO:0048868	Biological Process	88%
Blast2go	metabolic process	GO:0008152	Biological Process	88%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	88%
Blast2go	catalytic activity	GO:0003824	Molecular Function	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM3

Fln msg:

Fln protein: MASSAMAQVFGGFTALMPSFSSSNRLQLGFSKHPSEWKRSSIMIRLDASFSQYSNSRKRASKLVTSAVAVKDETATSPATSRTGHELLLFEALREGLDEEMERDPRVCIMGEDVGHYGGSYKVSKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDGPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ*

Protein Length: 409

Fln nts: CGGGAACGAAGGCGTCACAAACAATGTCATTATTGCATGTGCACACTTAAACAAATACAAATGACAAATGGCCAGTGGGGAGAAACACAGTAGGAAATCCATAGATACAGATATTATGTACAAAGGGTTTGCTTTGCTGTAATTACACCTGCAATTGCCCCGTTACAAGGCGGTTGCATAAGTTCCCACTTCGAAATTTGTGAGTTTCACTCTGCAAAATTATCTCAA_-_ATGGCAAGCTCAGCCATGGCCCAAGTGTTTGGAGGGTTTACAGCCCTAATGCCTTCTTTTTCATCCTCTAACAGATTGCAGCTGGGCTTCTCCAAGCATCCATCAGAATGGAAGAGGAGTTCTATTATGATCCGATTGGATGCTTCGTTTTCTCAATATTCAAATTCAAGGAAACGAGCTTCGAAATTGGTTACCAGTGCTGTGGCGGTGAAGGATGAGACTGCTACAAGTCCTGCAACATCAAGGACTGGGCACGAGCTGCTCTTGTTTGAGGCTCTTCGTGAAGGTTTGGACGAGGAGATGGAGAGGGATCCTCGAGTTTGTATCATGGGGGAGGATGTTGGCCATTATGGAGGTTCTTACAAAGTAAGCAAGGGCATGGCTGAAAAATATGGTGATTTGAGGGTGCTCGATACACCCATAGCTGAAAATTCTTTCACAGGGATGGGTGTTGGTGCTGCCATGACAGGGTTAAGGCCTGTTATTGAAGGAATGAATATGGGTTTTCTGCTATTGGCATTCAATCAGATATCAAATAATTGCGGCATGCTTCATTACACTTCAGGTGGGCAGTTTACTATTCCCGTCGTTATTCGAGGCCCTGGTGGGGTGGGGAGACAGTTAGGTGCAGAGCATTCACAACGGCTAGAATCTTATTTTCAGTCTGTTCCTGGATTGCAGATGGTTGCTTGCTCCACTCCATACAATGCAAAAGGGCTGATGAAAGCAGCTATTAGAAGTGAGAATCCCGTTATCTTGTTTGAGCATGTTCTTCTTTACAACTTGAAAGAGAAGATACCAGATGAAGAATATGTGTGTTGTCTTGAAGAAGCAGAAATGGTGCGCCCAGGTGCAGATATAACCATTCTGACTTATTCTCGTATGAGATACCATGTGATGCAGGCAGCAAAGACTTTAGTGAATAAGGGATATGATCCAGAGATAATTGACATCCGCTCTTTGAAGCCATTTGACTTGCACACAATTGGGAATTCAATAAAGAAGACACATAGAGTGCTGATTGTTGAAGAGTGCATGCGTACTGGTGGCATTGGAGCGAGTCTCAGGGCTGCAATTATTGAAAACTTTTGGGACTACTTAGATGGACCCATCATGTGCTTATCTTCACAGGATGTTCCAACACCATATGCAGGCACACTAGAGGACTGGACAGTGGTGCAACCTCCTCAAATTGTATCAGCAGTTGAGCAGCTTTGTCAATAG___GCTTCGTTTTTCTTTGACCAATGCAAAAGCCTTGGATAAAGTTGCAGGCCCATTGAAATTTTGGGTTGGTTATTGACATT

Fln Alignment:

Contig9896___MASSAMAQVFGGFTALMPSFSSSNRLQLGFSKHPSEWKRSSIMIRLDASFSQYSNSRKRASKLVTSAVAVKDETATSPATSRTGHELLLFEALREGLDEEMERDPRVCIMGEDVGHYGGSYKVSKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTXXXXXXXXXXXXXQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADITILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDGPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQLCQ
A9NWM3_________________MASSAMAQGVGGITALMPSFSSSNRLQLGFSKHLPEWKRSSIAIRLDASFSQSSNSRKRASKLVTSAVVVKDETATSPATSKTGHELLLFEALREGLDEEMERDPRVCVVGEDVGHYGGSYKVTKGMAEKYGDLRVLDTPIAENSFTGMGVGAAMTGLRPVIEGMNMGFLLLAFNQISNNCGMLHYTSGGQFTIPVVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLMKAAIRSENPVILFEHVLLYNLKEKIPDEEYVCCLEEAEMVRPGADVTILTYSRMRYHVMQAAKTLVNKGYDPEIIDIRSLKPFDLHTIGNSIKKTHRVLIVEECMRTGGIGASLRAAIIENFWDYLDAPIMCLSSQDVPTPYAGTLEDWTVVQPPQIVSAVEQICQ

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
92	33			66	0.997452
94			66	33	0.997452
96	66			33	0.997452
159		75		25	0.996473
183			80	20	0.995493
184			20	80	0.995493
222			16	83	0.994512
253	66	33			1.0
267	16			83	0.994512
268		16		83	0.994512
270		83		16	0.994512
271	75			25	1.0
273		85		14	0.993533
330	11	88			0.923564
333		88	11		0.923564
710			88	11	0.999952
762		81	6	12	0.999943
873	10		90		0.90298
875	10	90			0.90298
877	90			10	0.90298
938			83	16	0.999991
1334	10		90		0.90298
1335		10	90		0.90298
1337		90		10	0.90298
1338		90		10	0.90298
1360	10		90		0.90298
1361		10	90		0.90298
1364			90	10	0.90298
1432	60		40		1.0
1457		11		88	0.923564
1458		87	12		0.992554
1459			87	12	0.992554
1487			33	66	1.0
1491	66	33			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain