SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9881

Length: 315 nt

UniGene Fasta

>biog3_v1.0_unigene9881
CCATAGATGCTGCTGTCCAGGGGTGAATGGGGTGGAAGGTGTTCGTGAATCTGCCAGCCTGTATTTTACCTTGACTATTAAACCTTCCTGAGAATGGCGGCTATGTTGAGGCCCTGAAGATACCTGGGCGCATTTTGATTATTCACGGTTCACAATGCTTTCAGCTAAAGAAGAATTTGATTTCACTGAGCTGGTACAGGAGGCACAAATCCGGTGGTTGAAGCCTGTGGAAATTCTCTTCATATTAAAGAATTATAATAATTTCAAACTTAGTTCAGATCCACCTAGCAAGCCTCAGAGTGGTTCATTATTCCT

Ace file of the UniGene biog3_v1.0_unigene9881

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2767	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative calmodulin-binding protein similar to ER66 [Oryza sativa Japonica Group] gb\|AAM08663.1\|AC113338_19 Putative calmodulin binding protein similar to ER66 [Oryza sativa Japonica Group]	-	-	9.0e-16	50%
FL-Next	Isoform 2 of Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1	-	-	0.0	44%
Blast2go	calmodulin-binding transcription activator 4-like	-	-	1.57975e-16	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	1.57975e-16	79%
Blast2go	calmodulin binding	GO:0005516	Molecular Function	1.57975e-16	79%
Blast2go	nucleus	GO:0005634	Cellular Component	1.57975e-16	79%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	CG-1 DNA-binding domain	IPR005559	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9FY74-2

Fln msg: Distance to subject end: 927 aas, your sequence is shorter than subject: 53 - 989

Fln protein: MLSAKEEFDFTELVQEAQIRWLKPVEILFILKNYNNFKLSSDPPSKPQSGSLF

Protein Length: 54

Fln nts: CCATAGATGCTGCTGTCCAGGGGTGAATGGGGTGGAAGGTGTTCGTGAATCTGCCAGCCTGTATTTTACCTTGACTATTAAACCTTCCTGAGAATGGCGGCTATGTTGAGGCCCTGAAGATACCTGGGCGCATTTTGATTATTCACGGTTCACA_-_ATGCTTTCAGCTAAAGAAGAATTTGATTTCACTGAGCTGGTACAGGAGGCACAAATCCGGTGGTTGAAGCCTGTGGAAATTCTCTTCATATTAAAGAATTATAATAATTTCAAACTTAGTTCAGATCCACCTAGCAAGCCTCAGAGTGGTTCATTATTCCT

Fln Alignment:

Contig9881___DYSRFTMLSAKEEFDFTELVQEAQIRWLKPVEILFILKNYNNFKLSSDPPSKPQSGSLF
Q9FY74-2_______________DRRSFGSITPPLQLDMEQLLSEAQHRWLRPTEICEILQNYHKFHIASESPTRPASGSLF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain