SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9875

Length: 1365 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9875

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27282	33/34

Source	Descriptions	Term	Type	Identity
AutoFact	RNA helicase n=1 Tax=Vigna radiata var. radiata RepID=Q9M6R6_VIGRR	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	dead-box atp-dependent rna helicase 7-like	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	81%
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	GUCT	IPR012562	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKW8

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 205 aas, your sequence is shorter than subject: 414 - 802

Fln protein: M*RGF*FQYFGATEAEAQVQGD*VTLPHPGNDLRNYLQWLGHGRSSSYRTG*TLAFVLPIVESLTNGPNAKGRNTAYGRAPSVIVLVPTRELAKQVHADFEVYGGAVGLHSSSVYGGAPYGPQEYALRRGVDIIVGTPGRIKDHIERGTLNLKSLKFRVLDEADEMLNMGFVEHVETILGKVEDVSKVQTLLFSATMPDWVKKIASRFLKPDRKTADLVGDDKMKASRSVRHIVLPCFYSARTQVIPDVIRCYSSGGSVIVFTETKNDASELAGSLQNARALHGDIQQSQREVILAGFRSGKFPLLVATDVAARGLDINDVQLIIQCEPPRDVETYIHRSGRTGRAGNTGVSVMLYDRKKQYMISQIERQAGVKFERVSAPQPGEVAKATGSTAAESITSVSDSVLSHFSAIS*

Protein Length: 415

Fln nts: AATGTAACGCGGTTTCTAATTTCAATATTTCGGAGCCACTGAGGCAGAAGCTCAAGTCCAAGGGGATTGAGTCACTCTTCCCCATCCAGGCAATGACCTTCGAAATTATCTTCAATGGCTCGGACATGGTCGGTCGAGCTCGTACAGGACAGGGTAAACATTGGCATTTGTGTTGCCTATCGTGGAGTCATTAACAAATGGTCCGAATGCCAAAGGTAGGAATACAGCCTATGGAAGGGCCCCCAGTGTGATTGTGTTAGTTCCAACAAGGGAGCTTGCAAAACAGGTCCATGCTGACTTTGAGGTTTATGGTGGAGCTGTTGGCCTTCATTCATCCTCTGTATATGGAGGTGCTCCCTATGGTCCACAGGAATATGCATTGCGTAGAGGTGTGGATATCATTGTCGGGACACCTGGGCGCATTAAGGATCATATTGAAAGAGGGACATTGAATCTGAAATCCTTGAAATTTCGTGTCTTGGATGAGGCTGATGAAATGCTGAACATGGGCTTTGTAGAGCATGTTGAGACCATTCTTGGAAAAGTTGAGGATGTAAGCAAGGTTCAGACACTTCTTTTTAGTGCAACAATGCCAGATTGGGTAAAGAAGATTGCATCAAGGTTCTTGAAACCTGACAGAAAAACTGCAGATCTTGTGGGAGATGATAAGATGAAAGCTAGTAGAAGTGTGAGACACATCGTTCTTCCTTGTTTTTATTCAGCAAGAACACAAGTTATACCAGATGTTATTCGCTGCTATAGCAGTGGGGGAAGTGTGATTGTTTTTACTGAGACAAAGAATGATGCATCTGAACTCGCTGGATCTTTGCAAAATGCTCGTGCTTTGCATGGGGATATACAACAATCACAACGTGAAGTGATTCTTGCTGGATTCCGTTCGGGAAAGTTTCCACTCCTAGTTGCAACAGATGTTGCGGCACGCGGTTTGGACATCAATGATGTTCAGCTTATAATTCAGTGTGAACCACCAAGAGATGTGGAAACATACATTCATCGATCTGGGCGGACTGGTAGAGCAGGCAACACTGGAGTCTCTGTGATGCTTTATGATAGAAAGAAGCAATATATGATTTCTCAGATAGAAAGGCAGGCTGGTGTAAAATTTGAGCGTGTATCTGCTCCTCAGCCAGGAGAGGTTGCTAAAGCTACTGGATCAACTGCTGCAGAAAGTATTACTAGTGTCAGTGACAGTGTGCTTTCCCATTTTTCGGCAATCAGCTGAGGATCTGGTGAAGAAATCTGATCTTTCACCTGTGGATATCATTGCAAAAGCACTAGCAAAGATTGCAGGATACACAGAATTCAAGAGAAGATCATTACTGTCCTCTCAAGAGGGTTTTGCAA

Fln Alignment:

Contig9875___TG*TLAFVLPIVESLTNGPNAKGRNTAYGRAPSVIVLVPTRELAKQVHADFEVYGGAVGLHSSSVYGGAPYGPQEYALRRGVDIIVGTPGRIKDHIERGTLNLKSLKFRVLDEADEMLNMGFVEHVETILGKVEDVSKVQTLLFSATMPDWVKKIASRFLKPDRKTADLVGDDKMKASRSVRHIVLPCFYSARTQ--VIPDVIRCYSSGGSVIVFTETKNDASELAGSLQNA---RALHGDIQQSQREVILAGFRSGKFPLLVATDVAARGLDINDVQLIIQCEPPRDVETYIHRSGRTGRAGNTGVSVMLYDRKKQYMISQIERQAGVKFERVSAPQPGEVAKATGSTAAESITSVSDSVLSHF
B8LKW8_________________TGKTLAFGIPIIERLTKDNKENKLLRQSRRLPRVLVLAPTRELAKQVEKEFKE--SAPFLSTACIYGGVSYVSQQNALARGVDVVVGTPGRIIDLVNSKSLKLNEVQFLVLDEADQMLAVGFEEDVEIILDNLP--AERQSMLFSATMPGWVKKLSRKHLN-NPMTIDLVGENEEKLAEGIKLYAVATTTSSNSKRSILGDLITVFAKGGKTIVFTQTKRDADEISLGLSSTIACEALHGDISQHQRERTLAGFREGKFSALVATDVAARGLDITNVDLVIHYEFPNDPETFVHRSGRTGRAGKEGIAILMYPSNGKRKVRSLEHEVGCRFEYINPPRQEDVLETSTQHVAKALGSVHPELINIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain