SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9873

Length: 461 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9873
AATGTCTCGCTTTGCTGCAGCTTCTGCCATGCGTGGCACCGGGGCGTATTCTTCTCCAGGGATCCTCAACGGGAATCGCTCGCGGGCCAGTCTTGGTTTCCGATGGGGTTCGGGAGACGGCTTCATGGGGTTTTTTAATGAAGCCCAGTTCGGAGACAGGTCTGAAGCGGCTATTATATTCGAGTAGTTGCGAACGAGACTTACGGTTTCATGCCTTGCACTACAACTATAGTGGGAAATTTGTTTTTGTTGGCGGCTTATGGATACCTGATGTTCAAGTCTGCCACCCTTATTACGAATGGCTGCGAGCTTCTGTTGGTTGTGATGGGCAACGGTATAATTGGCGGGTTGTTTTTACCCATCCTCGGAGCTTTCCCCATTCCCTGCTGATCGCTGTATCTGGTCTATCTGGTTCAACTGTAATGTTATTGACAGCATTGTGGGGGGCATGTACGATTGTC

Ace file of the UniGene biog3_v1.0_unigene9873 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4460	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01699, Na_Ca_ex, Sodium/calcium exchanger protein	-	-	8.0e-17	23%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	61%
Blast2go	sodium calcium exchanger family protein	-	-	0.0	73%

Source	GOs	Term	Type	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	73%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3	SEC7-like	IPR000904	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Sperm-activating peptide	IPR013254	-	-
Sma3	Calcium binding protein	IPR015754	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: B9GGG0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 430 aas, atg_distance in limit (1-15): atg_distance = 8, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 60 - 591

Fln protein: MPCTTTIVGNLFLLAAYGYLMFKSATLITNGCELLLVVMGNGIIGGLFLPILGAFPIPC*

Protein Length: 61

Fln nts: AATGTCTCGCTTTGCTGCAGCTTCTGCCATGCGTGGCACCGGGGCGTATTCTTCTCCAGGGATCCTCAACGGGAATCGCTCGCGGGCCAGTCTTGGTTTCCGATGGGGTTCGGGAGACGGCTTCATGGGGTTTTTTAATGAAGCCCAGTTCGGAGACAGGTCTGAAGCGGCTATTATATTCGAGTAGTTGCGAACGAGACTTACGGTTTC_-_ATGCCTTGCACTACAACTATAGTGGGAAATTTGTTTTTGTTGGCGGCTTATGGATACCTGATGTTCAAGTCTGCCACCCTTATTACGAATGGCTGCGAGCTTCTGTTGGTTGTGATGGGCAACGGTATAATTGGCGGGTTGTTTTTACCCATCCTCGGAGCTTTCCCCATTCCCTGCTGATCGCTGTATCTGGTCTATCTGGTTCAACTGTAATGTTATTGACAGCATTGTGGGGGGCATGTACGATTGTC

Fln Alignment:

Contig9873___ETYGFMPCTTTIVGNLFLLAAYGYLMFKSATLITNGCELLLVVM
B9GGG0_________________QTYGFLPCTTTVIGNLFLILVYGYLMFFAATYLSSGSELLLQIL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
268	16		83		0.994512
285			20	80	0.995493
287		20		80	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain