SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9872

Length: 1040 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9872

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1251	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	Shwachman-Bodian-Diamond syndrome protein, putative n=1 Tax=Ricinus communis RepID=B9S2M8_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	74%
Blast2go	positive regulation of translation	GO:0045727	Biological Process	74%
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	74%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome maturation protein SBDS, C-terminal	IPR018978	-	-
Sma3	Ribosome maturation protein SBDS, conserved site	IPR018023	-	-
Sma3	Ribosome maturation protein SBDS, N-terminal	IPR019783	-	-
Sma3	Ribosome maturation protein SBDS	IPR002140	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNC3

Fln msg: Distance to subject end: 41 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 346 - 380

Fln protein: CIGNVKDNSTARWAKRLTNVAVVCLKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYSNVSKGILAKSKDLIKSFGTDDHENICLEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDPHKSSKQQALDLIRELQKHFPIKRSPMRLRLVIPEIQEANFLQKIQTWSPCIVSKEVSGNQLSMVCQIEPGYFRDCDGVVRDCKGRLEILSAPVHKEEDVEEDVRVLGDNNQEALTENIHNLELGRSESESQVKRLAKSMNNATLGDNSSSNAKLGTGKVPGVEGTAINQEEKRQQKCTTCNANVGDAKQYRDHFK

Protein Length: 347

Fln nts: A_-_ATGTATTGGAAATGTCAAAGACAATAGTACAGCCCGTTGGGCAAAAAGATTAACGAACGTAGCCGTAGTTTGCTTGAAGAAACACGGAATGCGTTTTGAAATTGCTTGTTACAAGAATAAAGTGCTCTCATGGCGGTCAGGAGTAGAGAAGGATTTGGATGAGGTGCTGCAGTCTCATACAGTGTATTCAAATGTCTCCAAAGGAATTCTGGCAAAATCTAAGGACTTGATAAAATCTTTTGGAACAGATGATCATGAAAATATATGTTTGGAGGTTCTTAATAAAGGTGAGCTCCAAATTGCGGGAAAGGAGAGAGAATCTCAGTTATCAAGCCAGTTCCGTGACATTGCAACAATTGTGATGGAGAAGACAATCAACCCTGAGACTGATCGGCCATATACAATCAACATGATTGAACGCCTAATGCACGAAGTCCATTTTGCTGTAGATCCTCACAAAAGTTCAAAGCAACAGGCTCTGGATCTTATTCGGGAGCTCCAAAAGCATTTTCCCATAAAAAGATCACCAATGAGGTTGCGACTTGTAATCCCTGAGATTCAGGAAGCCAATTTCTTGCAGAAAATTCAAACCTGGAGTCCTTGCATCGTGTCCAAAGAGGTCTCTGGTAATCAGCTGTCTATGGTTTGTCAGATTGAACCTGGTTACTTCCGAGATTGTGATGGCGTAGTACGAGATTGTAAAGGGAGGCTTGAAATTCTCTCTGCGCCTGTACACAAGGAGGAAGATGTGGAGGAAGATGTAAGAGTTCTTGGGGATAACAATCAAGAAGCTTTGACAGAAAATATTCACAATTTGGAACTAGGCAGAAGTGAATCAGAAAGTCAAGTCAAAAGATTGGCAAAAAGTATGAACAATGCTACTCTTGGAGATAATAGTTCTTCAAATGCAAAGCTTGGTACTGGGAAAGTACCTGGTGTTGAAGGCACAGCAATTAATCAAGAAGAGAAGAGGCAACAAAAATGCACAACTTGCAATGCAAATGTAGGTGATGCAAAGCAATACCGAGATCATTTTAAG

Fln Alignment:

Contig9872___KRLTNVAVVCLKKHGMRFEIACYKNKVLSWRSGVEKDLDEVLQSHTVYSNVSKGILAKSKDLIKSFGTDDHENICLEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDPHKSSKQQALDLIRELQKHFPIKRSPMRLRLVIPEIQEANFLQKIQTWSPCIVSKEVSGNQLSMVCQIEPGYFRDCDGVVRDCKGRLEILSAPVHKEEDVEEDVRVLGDNNQEALTENIHNLELGRSESESQVKRLAKSMNNATLGDNSSSNAKLGTGKVPGVEGTAINQEEKRQQKCTTCNANVGDAKQYRDHFK
A9NNC3_________________KRLTNVAVVRLKKHGMRFEIACYKNKVLSWRSGVETDLDEVLQSHTVYSNVSKGILAKSKDLIKSFGTDDQEKICSEVLNKGELQIAGKERESQLSSQFRDIATIVMEKTINPETDRPYTINMIERLMHEVHFAVDPHKISKQQALDLIRELQKHFPIKRSPMRLRLIIPEIQEANFLQKLQTWNPCIVSKEVSGNQLSMVCQIEPGYFRDCDGLVRDCKGRLEILSVPVHKEEDVRVEV----DDGEEALTGNLHNLELGRSESESRVKRLAESMNKTTLGDNSSSNGKLGTGKGAGVEGTAINHEEKRQQKCTTCNANVGDAKQYRDHFK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain