SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9858

Length: 887 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9858 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18519	23/24

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING finger-like protein [Oryza sativa Japonica Group] dbj\|BAB90773.1\| RING finger-like protein [Oryza sativa Japonica Group] dbj\|BAG89633.1\| unnamed protein product [Oryza sativa Japonica Group]	-	-	6.0e-39	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	zinc finger family protein	-	-	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
217	14		85		0.993533
234	12	87			0.992554
235			87	12	0.992554
236	87		12		0.992554
237			87	12	0.992554
270	12	87			0.992554
271	12			87	0.992554
272		87		12	0.992554
273	87		12		0.992554
274		87		12	0.992554
327	10			90	0.90298
328	90			10	0.90298
446	25	75			1.0
492	33	66			1.0
529	14			85	0.993533
544			85	14	0.993533
545		85		14	0.993533
570	14		85		0.993533
572	85			14	0.993533
830			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain