SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9856

Length: 2567 nt

UniGene Fasta

>biog3_v1.0_unigene9856
CTGGTGCTCACCGATGTCCTATGGCCAAAACGCCATAGCGGTGAATGAATTTTTGGCTCCCAGATGGGACAAACCCGTCAGTAACAGCTCCAATCAAACAGTTGGACGTGCTGTCCTAGAATCTCGTGGATTATTTGCTGAAGCTAAATTTTATTGGATTGGCATTGGAGCATTGGTTGGGTTCTGTGTACTTCTCAACATTCTGTACACTGTTGCTTTAGCGTGCCTGAACCCTTTCGGGGATTCACAGGCTGTTATATCTGAAGATATTATTGAAGAGAAGCAAGCAAACAGAACTGGAGAAAGCAACCAAGGAAAGAGACATCATTCTGTTGAACTGACATCTCAGAGAAGGTCCAGTGAGAGGAGAGAGAGTCTAACTTCTGAAGACAATTCTACACATGTTGGAGAAGCCAATGCCATTCAAATCTCGGCACAACACAATAAAGGAATGATACTTCCTTTCCAGCCATTGTCAATGGCTTTTGAGAACATAAACTATTATGTTGACATGCCACAGGAGATGAAAAGTGAAGGTTTGGCTCAAGAGAGGTTACAGCTCCTTTCCAATGTAAGTGGATCCTTTAGACCAGGGGTACTTACAGCCCTGATGGGAGTTAGCGGTGCTGGAAAAACTACCCTAATGGATGTCTTGGCTGGAAGAAAATCAGGGGGCTATATAGATGGAAGTATAAGCATCTCTGGGTTCCCGAAGAAGCAAGAAACATTTGCTCGCATCTCAGGGTACTGTGAACAAAATGATATCCACTCTCCAAATGTCACAGTGTTTGAATCACTCGTGTATTCTGCATGGCTCCGTCTTCCTGGCGAGGTTGATGAGAAAACTAGAATGATGTTTGTGGCAGAAGTCATGGAGCTTGTAGAGCTCACTCCTCTAAGAGATGCCATTGTAGGGCTTCCTGGAGTGACAGGTCTTTCTACAGAGCAAAGGAAGAGACTTACCATAGCAGTGGAACTAGTTGCCAATCCTTCTATAATCTTCATGGATGAGCCAACTTCAGGACTAGATGCTCGTGCTGCAGCGATAGTTATGCGTACTGTTCGCAACACAGTCAATACAGGTCGAACTGTTGTTTGTACCATCCACCAACCCAGCATTGATATCTTTGAAGCTTTTGACGAGCTGTTACTCCTGAAAAGGGGTGGCCAAGTCATCTATGCAGGTCCTGTAGGTCGTCATTCTCATAAACTCATTGAGTATTTTGAGGCTGTTTCAGGAGTTCCACAGATTACAGAAGGATACAATCCAGCAACATGGGCACTAGAAGTGAGTTCCATGGCTACTGAGGAAAGACTTGGTGTAGATTTTGCTGAAATCTACAGAAAATCGGCACTCCATGAATGGAATCAAGCTCTTATTAAAGAGCTAAGCACCCCTGCTCCTGGCTCACAGGATCTGAATTTTCCAACTCAGTATGCACAGTCCTTCAACGTTCAGTGCACGGCCTGTCTTTGGAAGCAACATTGGTCATATTGGAGGAATCCACACTATAATGTTGTGCGGTTTTCTTCACTACAGTGGTTGCCCTACTGTTTGGGACCATCTTTTGGGACCTTGGAACAAAGAGAGGTAAACAGCAAGATCTACTCAATATTCTGGGATCAATGTACTGTGCTGTACTTTTCCTTGGTGTTAGTAATTCATCAAGTGTCCAGCCAATTGTCGAGGTTGAACGAACTGTCTTTTACAGAGAAAAGGCTGCTGGAATGTATTCAGCACTGCCTTATGCCCTTGGACAGGTGGCAATCGAAGTGCCTTATGTTCTTATGCAGTGTGTAATCTATGCCATCTTGGTCTATTCTATGATTGCTTTCGAGTGGACAGCTGTCAAGTTCTTCTGGTTCTTCTTCATCATGTTTTTCACTTTTCTATACTTTACATATTTTGGAATGCTGACAGTAGCTGTGACTCCAAATTACCATATTGGTGCAATCATTTCATCAGCTTTTTATTCTTTATGGAATCTCTTCTGTGGTTTCATTATTCCTCGACCTAAAATGCCTATATGGTGGAGATGGTACTACTGGGGAACCCCCATTTCTTGGACACTCTATGGTCTGATTGCTTCACAGTTGGGTGATGTAGAAACTGAGATGGTGACAGTTGATGGGAATGTGAAGGTATCCACATTCATAAAATCATATTTTGGGATGAGACACGACTTTTTGGGAATTGTAGCACTGGTGCTTGTGTGTATCCCCGTTGCTTTTGCTTTGTTCTTTGCTCTGGCCATCAGACAACTCAACTTCCAAAAAAGATAGAAATCGCCTCACATGCTCATTGGATATATGTACTGTTATTTTCTTCAATATGGCTGCTTGATACTGGTTGACTCAAGTGTGTACAGGCAACCATATGCTTCAGTTGAAGTCATGAATTTGTGTTATTGAATACTATTCTTTAGGATTATGTACATATAATAAATACCATCGTTTTGGGTTCTGAATTGTTATTAAGATACTATTTTGTATGCTCAAAGATAATTTTGTTTGGGCTGAGATACTGAAATGGCTCCAATCACTTTGCAATATTAAGCTGGTACATT

Ace file of the UniGene biog3_v1.0_unigene9856

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8275	72/76
SustainPine v2.0	sp_v2.0_unigene82551	1/76
SustainPine v2.0	sp_v2.0_unigene82577	2/76

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Probable pleiotropic drug resistance protein 2 emb\|CAD59566.1\| PDR-like ABC transporter [Oryza sativa Japonica Group] tpg\|DAA00885.1\| TPA_exp: PDR2 ABC transporter [Oryza sativa (japonica cultivar-group)]	-	-	0.0	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Overlapping hits, possible frame ERROR between 1528 and 1528, your sequence is longer than subject: 757 - 412

Fln protein: MSYGQNAIAVNEFLAPRWDKPVSNSSNQTVGRAVLESRGLFAEAKFYWIGIGALVGFCVLLNILYTVALACLNPFGDSQAVISEDIIEEKQANRTGESNQGKRHHSVELTSQRRSSERRESLTSEDNSTHVGEANAIQISAQHNKGMILPFQPLSMAFENINYYVDMPQEMKSEGLAQERLQLLSNVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKSGGYIDGSISISGFPKKQETFARISGYCEQNDIHSPNVTVFESLVYSAWLRLPGEVDEKTRMMFVAEVMELVELTPLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPVGRHSHKLIEYFEAVSGVPQITEGYNPATWALEVSSMATEERLGVDFAEIYRKSALHEWNQALIKELSTPAPGSQDLNFPTQYAQSFNVQCTACLWKQHWSYWRNPHYNVVRxxFTTVVALLFGTIFWDLGTKRGKQQDLLNILGSMYCAVLFLGVSNSSSVQPIVEVERTVFYREKAAGMYSALPYALGQVAIEVPYVLMQCVIYAILVYSMIAFEWTAVKFFWFFFIMFFTFLYFTYFGMLTVAVTPNYHIGAIISSAFYSLWNLFCGFIIPRPKMPIWWRWYYWGTPISWTLYGLIASQLGDVETEMVTVDGNVKVSTFIKSYFGMRHDFLGIVALVLVCIPVAFALFFALAIRQLNFQKR*

Protein Length: 758

Fln nts: CTGGTGCTCACCG_-_ATGTCCTATGGCCAAAACGCCATAGCGGTGAATGAATTTTTGGCTCCCAGATGGGACAAACCCGTCAGTAACAGCTCCAATCAAACAGTTGGACGTGCTGTCCTAGAATCTCGTGGATTATTTGCTGAAGCTAAATTTTATTGGATTGGCATTGGAGCATTGGTTGGGTTCTGTGTACTTCTCAACATTCTGTACACTGTTGCTTTAGCGTGCCTGAACCCTTTCGGGGATTCACAGGCTGTTATATCTGAAGATATTATTGAAGAGAAGCAAGCAAACAGAACTGGAGAAAGCAACCAAGGAAAGAGACATCATTCTGTTGAACTGACATCTCAGAGAAGGTCCAGTGAGAGGAGAGAGAGTCTAACTTCTGAAGACAATTCTACACATGTTGGAGAAGCCAATGCCATTCAAATCTCGGCACAACACAATAAAGGAATGATACTTCCTTTCCAGCCATTGTCAATGGCTTTTGAGAACATAAACTATTATGTTGACATGCCACAGGAGATGAAAAGTGAAGGTTTGGCTCAAGAGAGGTTACAGCTCCTTTCCAATGTAAGTGGATCCTTTAGACCAGGGGTACTTACAGCCCTGATGGGAGTTAGCGGTGCTGGAAAAACTACCCTAATGGATGTCTTGGCTGGAAGAAAATCAGGGGGCTATATAGATGGAAGTATAAGCATCTCTGGGTTCCCGAAGAAGCAAGAAACATTTGCTCGCATCTCAGGGTACTGTGAACAAAATGATATCCACTCTCCAAATGTCACAGTGTTTGAATCACTCGTGTATTCTGCATGGCTCCGTCTTCCTGGCGAGGTTGATGAGAAAACTAGAATGATGTTTGTGGCAGAAGTCATGGAGCTTGTAGAGCTCACTCCTCTAAGAGATGCCATTGTAGGGCTTCCTGGAGTGACAGGTCTTTCTACAGAGCAAAGGAAGAGACTTACCATAGCAGTGGAACTAGTTGCCAATCCTTCTATAATCTTCATGGATGAGCCAACTTCAGGACTAGATGCTCGTGCTGCAGCGATAGTTATGCGTACTGTTCGCAACACAGTCAATACAGGTCGAACTGTTGTTTGTACCATCCACCAACCCAGCATTGATATCTTTGAAGCTTTTGACGAGCTGTTACTCCTGAAAAGGGGTGGCCAAGTCATCTATGCAGGTCCTGTAGGTCGTCATTCTCATAAACTCATTGAGTATTTTGAGGCTGTTTCAGGAGTTCCACAGATTACAGAAGGATACAATCCAGCAACATGGGCACTAGAAGTGAGTTCCATGGCTACTGAGGAAAGACTTGGTGTAGATTTTGCTGAAATCTACAGAAAATCGGCACTCCATGAATGGAATCAAGCTCTTATTAAAGAGCTAAGCACCCCTGCTCCTGGCTCACAGGATCTGAATTTTCCAACTCAGTATGCACAGTCCTTCAACGTTCAGTGCACGGCCTGTCTTTGGAAGCAACATTGGTCATATTGGAGGAATCCACACTATAATGTTGTGCGGxxxxxxTTCACTACAGTGGTTGCCCTACTGTTTGGGACCATCTTTTGGGACCTTGGAACAAAGAGAGGTAAACAGCAAGATCTACTCAATATTCTGGGATCAATGTACTGTGCTGTACTTTTCCTTGGTGTTAGTAATTCATCAAGTGTCCAGCCAATTGTCGAGGTTGAACGAACTGTCTTTTACAGAGAAAAGGCTGCTGGAATGTATTCAGCACTGCCTTATGCCCTTGGACAGGTGGCAATCGAAGTGCCTTATGTTCTTATGCAGTGTGTAATCTATGCCATCTTGGTCTATTCTATGATTGCTTTCGAGTGGACAGCTGTCAAGTTCTTCTGGTTCTTCTTCATCATGTTTTTCACTTTTCTATACTTTACATATTTTGGAATGCTGACAGTAGCTGTGACTCCAAATTACCATATTGGTGCAATCATTTCATCAGCTTTTTATTCTTTATGGAATCTCTTCTGTGGTTTCATTATTCCTCGACCTAAAATGCCTATATGGTGGAGATGGTACTACTGGGGAACCCCCATTTCTTGGACACTCTATGGTCTGATTGCTTCACAGTTGGGTGATGTAGAAACTGAGATGGTGACAGTTGATGGGAATGTGAAGGTATCCACATTCATAAAATCATATTTTGGGATGAGACACGACTTTTTGGGAATTGTAGCACTGGTGCTTGTGTGTATCCCCGTTGCTTTTGCTTTGTTCTTTGCTCTGGCCATCAGACAACTCAACTTCCAAAAAAGATAG___AAATCGCCTCACATGCTCATTGGATATATGTACTGTTATTTTCTTCAATATGGCTGCTTGATACTGGTTGACTCAAGTGTGTACAGGCAACCATATGCTTCAGTTGAAGTCATGAATTTGTGTTATTGAATACTATTCTTTAGGATTATGTACATATAATAAATACCATCGTTTTGGGTTCTGAATTGTTATTAAGATACTATTTTGTATGCTCAAAGATAATTTTGTTTGGGCTGAGATACTGAAATGGCTCCAATCACTTTGCAATATTAAGCTGGTACATT

Fln Alignment:

Contig9856___IHQPSIDIFEAFDELLLLKRGGQVIYAGPVGRHSHKLIEYFEAVSGVPQITEGYNPATWALEVSSMATEERLGVDFAEIYRKSALHEWNQALIKELSTPAPGSQDLNFPTQYAQSFNVQCTACLWKQHWSYWRNPHYNVVRFFFTTVVALLFGTIFWDLGTKRGKQQDLLNILGSMYCAVLFLGVSNSSSVQPIVEVERTVFYREKAAGMYSALPYALGQVAIEVPYVLMQCVIYAILVYSMIAFEWTAVKXXXXXXXXXXXXXXXXXXGMLTVAVTPNYHIGAIISSAFYSLWNLFCGFIIPRPKMPIWWRWYYWGTPISWTLYGLIASQLGDVETEMVTVDG---NVKVSTFIKSYFGMRHDFLGIVALVLVCIPVAFALFFALAIRQLNFQKR
D5ACV1_________________IHQPSIDIFEAFDELLLMKRGGQVIYAGPVGHHSYKLIEYFEAIPGVPKIRDGYNPATWMLEISSPAAETHLGVDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRNPTYNVVRFFFTTVTALLFGSIFWGLGSKTYKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFWFLFYMFMCFVYFTLYGMMAVALTPGHQIAAIVSSFFYGFWNIFSGFLITRPQIPVWWRWYYWANPVAWTLYGLITSQLGDL-TGFVEVAGEKDTMSVQQFLEGYFGYRHDFLGVVAAVHVGIVILFFSVFAFGIKYLNFQRR

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
396	20			80	0.995493
400	80			20	0.995493
458		16		83	0.994512
460		83		16	0.994512
1009	33		66		0.997452
1014			66	33	0.997452
1091		85		14	0.993533
1147	16	83			0.994512
1148		16		83	0.994512
1149	16		83		0.994512
1155		80		20	0.995493
1201	20	80			0.995493
1257		66		33	1.0
1351	90			10	0.90298
1354	10		90		0.90298
1355			90	10	0.90298
1398		88		11	0.923564
1402			11	88	0.923564
1413		88	11		0.923564
1414	88		11		0.923564
1435	14			85	0.993533
1452	14			85	0.993533
1455	85			14	0.993533
1456		85		14	0.993533
1713	40	60			1.0
1714	20	40	40		1.0
1715	40		60		1.0
1773		40		60	1.0
1774	40	60			1.0
1775			40	60	1.0
1776	40			60	1.0
2200	10			90	0.90298
2201		11	88		0.923564
2203	88			11	0.923564
2226	14	85			0.993533
2228	14		85		0.993533
2317	16		83		0.994512
2318	16	16		66	0.988813
2319	33	16		50	1.0
2320	16	66		16	0.988813
2321	16			83	0.994512
2322			60	40	1.0
2415	25		75		0.996473
2416	75	25			0.996473
2419	75			25	0.996473
2439	33			66	0.997452
2440		33	66		0.997452
2441	33		66		0.997452
2443	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain