SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9852

Length: 891 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9852

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2409	3/9
SustainPine v2.0	sp_v2.0_unigene27475	5/9

Source	Descriptions	Term	Type	Identity
AutoFact	peroxisomal targeting signal 1 receptor [Nicotiana tabacum]	-	-	54%
FL-Next	sp=Peroxisome biogenesis protein 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	61%
Blast2go	peroxisomal targeting signal 1 receptor	-	-	69%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Hemolysin-type calcium-binding conserved site	IPR018511	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FMA3

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 369 aas, your sequence is shorter than subject: 290 - 728

Fln protein: AWLQAC*PC*I*RCLA*VHRDPTSHFCTLSNWRRP*LLS*V*TNL*PRHCNIQAQPDLEGAPQRVLSGFLRSFVDSSRAEIPFRPAQLPVLGLSEGDKRCIRDRSSIMARHFFADKSEDYINAQVNALLHSLDIENDLRAWTPTGGRFSELEEYWNESQGAGYNSMVRNNFDTSHPSDKWVTEYSQRSNISGYWAEEFEQDHGVEAWAGQFNQEQSQMASMTNMRNMNISNAAALEQTRMLAHTLSQNQDPKFQNSKFLQFVSKMSRGELIVDDNQVKPAGSSSANAWG*

Protein Length: 291

Fln nts: TGCATGGCTTCAAGCCTGTTGACCATGCTAGATATGAAGGTGCTTGGCATGAGTCCACAGGGATCCCACATCTCACTTCTGTACACTATCAAACTGGAGAAGGCCATGATTATTATCCTGAGTTTGAACAAATTTATGACCAAGGCATTGTAACATTCAAGCCCAACCTGACCTTGAGGGAGCTCCACAAAGGGTACTATCAGGCTTCCTCCGGTCTTTTGTGGACAGTAGCAGAGCAGAAATTCCTTTCCGACCAGCACAGCTTCCAGTTCTAGGTTTGTCAGAAGGTGACAAACGATGTATACGTGACCGTAGCAGCATTATGGCACGCCACTTTTTTGCTGATAAAAGTGAAGATTATATTAATGCACAGGTAAATGCACTTCTGCATTCTTTGGATATTGAAAATGATCTCAGGGCTTGGACTCCTACCGGTGGGAGATTCTCAGAGCTGGAAGAGTACTGGAATGAATCCCAGGGTGCTGGTTATAATTCCATGGTTAGAAACAATTTTGATACCTCTCATCCTTCTGACAAATGGGTCACAGAATATAGTCAAAGAAGCAATATATCTGGATACTGGGCTGAAGAGTTTGAGCAAGATCATGGTGTTGAAGCTTGGGCAGGCCAGTTCAATCAGGAACAGTCTCAGATGGCATCTATGACAAATATGAGAAACATGAACATTTCAAATGCCGCAGCATTGGAGCAAACGCGTATGCTTGCCCATACATTGTCTCAAAATCAAGATCCAAAGTTTCAGAATTCAAAGTTCCTCCAGTTTGTATCTAAAATGAGTCGTGGAGAGTTGATCGTTGATGATAACCAGGTTAAACCTGCTGGTTCATCCTCGGCCAATGCATGGGGCTGATGAATATCAGCATCAGCATG

Fln Alignment:

Contig9852___QPDLEGAPQRVLSGFLRSFVDSSRAEIPFRPAQLPVLGLSEGDKRCIRDRSSIMARHFFADKSEDYINAQVNALLHSLDIENDLRAWTPTGGRFSELEEYWNESQGAGYNSMVRNNFDTSHPSDKWVTEYSQRSNISG---YWAEEFEQDHGVEAWAGQFNQEQSQMASMTNMRNMNISNAAALEQTRMLAHTLSQNQDPKFQNSKFLQFVSKMSRGELIVDDNQVK
Q9FMA3_________________QPTFEGPPQRVLSNFLHSFVESSRGGIPFRPAPVPVLGLSQSDKQCIRDRSSIMARHFFADRGEEFINSQVNALLSSLDIDDGIQARGHVPGRFRELDDYWNESQ-----AVVKPNL---HPADNWAAEFNQHGMDHGGPDSWVQSFEQQHGVNGWATEFEQGQSQLMS-SQMRSMDMQNIAAMEQTRKLAHTLSQDGNPKFQNSRFLQFVSKMSRGELIIDENQVK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
297	66	33			0.997452
299		66		33	0.997452
300			66	33	0.997452
572	80			20	0.995493
580	25		75		0.996473
581		25	75		0.996473
584	25	50		25	0.995533
588			66	33	0.997452
720		75		25	0.996473
722		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain