SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9830

Length: 1545 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9830 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8114	48/49
SustainPine v2.0	sp_v2.0_unigene61355	1/49

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tify multi-domain protein	-	-	2.0e-11	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSR8

Fln msg:

Fln protein: MSQDQAVAMDFLGIEKGSVKNESQTDENPVTAQAKQEPLATEQMTSPAASAPAEGNKMNFSQAFSLFSKHFNEKGIGNAAVGRGENVYLGNGKEDVKGSKPVNEENVSTHLGLYSQQTGFGPLRPFPGAEQKGFASTTAQPWLSRSILPPNSPVMRSAVTSTPSVKPPTAQLTIFYAGVVNVYDDVPADKAQAIMLLADSGNPLNASFIKPASFAQQTPVNSPLNSIPKTSLSLQTSGGASEVVTTPIPLAGGPNHQPIRKLQADLPIARKHSLQRFLEKRKDRLMTKAPYPASPAPMKSELEEQTCGSASPLLLSCQSPSSLTSRPLSGGCCNENSVSQDPSAPPVSAYIS*

Protein Length: 354

Fln nts: GGATCTGATTAGAAGCAAGCACCACCGCGTCTAAATTTCAACTCGCCTCGCATCTCATCGCATCAGAACGGAAAACAGAAGTTCTCGACCGAGGAAAGGGCTGCAAGAGCGCGCTTGCTTTGGCTGTGGATGATTTGAAAAACGATTCTTGAAAATTGAGGTCTGCGGAAAGACGGTGAGGGCGGAAGACGTGCCATCATTTCGGATTTCGGTTCCTGACAGGAGAG_-_ATGTCGCAAGATCAGGCCGTAGCGATGGATTTCCTGGGGATCGAGAAGGGCTCTGTGAAAAACGAGTCTCAAACGGATGAAAATCCCGTCACTGCACAGGCAAAACAAGAACCTCTCGCTACTGAGCAAATGACGAGTCCCGCTGCATCCGCCCCTGCTGAGGGTAATAAAATGAATTTTTCGCAGGCTTTTAGCCTTTTTAGCAAACATTTTAACGAGAAAGGAATCGGCAACGCTGCCGTAGGCCGTGGAGAAAACGTTTACCTTGGTAACGGGAAAGAGGATGTCAAAGGATCGAAACCGGTAAATGAGGAAAATGTCTCCACCCACCTTGGTTTATACTCTCAGCAGACAGGCTTTGGTCCCCTCCGCCCTTTTCCTGGAGCAGAGCAAAAGGGTTTCGCGTCCACAACAGCTCAGCCGTGGCTGTCTCGTAGCATTTTGCCTCCAAACTCACCGGTCATGAGGTCGGCTGTTACTTCGACCCCGTCAGTTAAGCCTCCTACTGCACAACTGACTATATTCTATGCCGGCGTGGTAAACGTCTATGACGATGTACCGGCTGACAAGGCCCAAGCTATAATGCTGCTCGCTGATAGTGGAAATCCTTTAAACGCTAGCTTTATAAAACCTGCAAGTTTTGCTCAACAAACCCCTGTAAACTCTCCGTTGAACTCCATACCAAAGACTTCTTTATCTCTTCAGACTTCTGGCGGGGCTTCTGAGGTGGTTACCACTCCCATACCATTGGCAGGCGGTCCAAATCACCAACCGATTCGTAAGTTACAAGCTGACCTTCCGATTGCAAGAAAACATTCCCTTCAGCGATTTCTTGAGAAACGCAAAGACAGGCTGATGACCAAGGCTCCCTACCCGGCCTCGCCCGCACCTATGAAGTCTGAACTAGAGGAGCAGACTTGTGGGTCTGCCTCTCCTCTTCTGCTTTCATGCCAATCTCCGTCATCATTAACATCTCGTCCGCTCTCAGGAGGCTGTTGCAACGAAAATTCAGTTTCTCAGGACCCATCGGCCCCTCCTGTGTCAGCTTACATATCCTAA___GCATCTGACGTTGATCGTTTGATTGGAGCTCATGGATCTCAGGAAAACAATATGAAGCTTCAATGGAAAGATATAAAACTGAAATAGAATTAGGATAGAGGGACAAGGCCATGAAAGAAACAAAAGTGAAAAATTACGGAGCGTGTAAAATCCTCTTAGGACTTGTTATGCTTGCTCAACTCTTGAACTCTAATTGGGATTTTTGTTCAGATAGTTCACTCATTACTTTCTTTTCATGAAATGGACGTTAAGTTACATT

Fln Alignment:

Contig9830___MSQDQAVAMDFLGIEKGSVKNESQTDENPVTAQAKQEPLATEQMTSPAASAPAEGNKMNFSQAFSLFSKHFNEKGIGNAAVGRGENVYLGNGKEDVKGSKPVNEENVSTHLGLYSQQTGFGPLRPFPGAEQKGFASTTAQPWLSRSILPPNSPVMRSAVTSTPSVKPPTAQLTIFYAGVVNVYDDVPADKAQAIMLLADSGNPLNASFIKPASFAQQT----PVNSPLNSIPKTSLSLQTSGGASEVVTTPIPLAGGPN-HQPIRKLQADLPIARKHSLQRFLEKRKDRLMTKAPYPASPAPMKSELEEQTCGXXXXXXXXXXXXXXXXXXPLSGGCCNENSVSQDPSAPPVSAYIS
C0PSR8_________________MSQDQAVAMDFLGVEKGSVKKESQTDENPVTAQSKQEPVATEQMTSPAASAPSEGSTMNFSQAFSLFSKHFNEKGNGNAAIGRGENVYLGNGKEDVKGSKPVNEENVSTQLGLFSQQSGFGSLRPFPGAEQKGFASTTAQPWLFRGILPPNSPAMRPAVTSTPPIKPPTAQLTIFYAGMVNVYDDVPADKAQAIMLLADSGNPLNASFIKPANFAQQTPCVSPVSSPLSSIPRTSLSLQTSGGTTEVATPTMPLA--PNHHQPIRKLQADLPIARKHSLQRFLEKRKDRLMTKAPYPASPAPMKSEMEEQPSVSASPLLLSCQSPSSLTSRPLSGVCCNENSVTQEPSPPPVSAYIS

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
211	28			71	1.0
244		87		12	0.992554
283			75	12	0.975346
284		12	75	12	0.975346
286			85	14	0.993533
287			85	14	0.993533
325	12	87			0.992554
326	87			12	0.992554
327	12		87		0.992554
328		87		12	0.992554
329	12	87			0.992554
331		87		12	0.992554
622		12	87		0.992554
625	87			12	0.992554
693	11			88	0.923564
696	88			11	0.923564
710	88	11			0.923564
712			88	11	0.923564
713			88	11	0.923564
974	10		90		0.90298
977	90			10	0.90298
1019		10	90		0.90298
1020	18			81	0.999994
1023		90	10		0.90298
1024			90	10	0.90298
1126	20	80			0.995493
1127		20		80	0.995493
1129	80			20	0.995493
1130	80			20	0.995493
1283	14	85			0.993533
1286			85	14	0.993533
1287			85	14	0.993533
1299	14			85	0.993533
1301		85		14	0.993533
1312	12			87	0.992554
1313	12		87		0.992554
1314		87		12	0.992554
1316	87			12	0.992554
1379	14	85			0.993533
1381	14		85		0.993533
1382		85		14	0.993533
1383	85			14	0.993533
1395	16			83	0.994512
1398	83			16	0.994512
1399			83	16	0.994512
1468	25			25	0.995533
1482			33	66	0.997452
1485	33		66		0.997452
1488			66	33	0.997452
1489	33	66			0.997452
1490		33	66		0.997452
1493			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain