SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9816

Length: 780 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9816

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9697	12/45
SustainPine v2.0	sp_v2.0_unigene16911	9/45
SustainPine v2.0	sp_v2.0_unigene28613	24/45

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GAST1 protein, putative n=1 Tax=Ricinus communis RepID=B9R733_RICCO	-	-	3.0e-23	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	gast1 protein	-	-	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
93	16	83			0.994512
96	80			20	0.995493
114	14	71	14		0.984337
115	14	71			0.984337
146	77			22	0.999999
148		77		22	0.999999
368		90	10		0.90298
411	11		88		0.923564
413	11		88		0.923564
415			88	11	0.923564
673	10			90	0.90298
674		10		90	0.90298
676	90			10	0.90298
687		11	88		0.923564
689		87		12	0.992554
692	14	14		57	0.979185
693	14	14			0.984337
694	14		71		0.984337
695	50		50		1.0
696	40	60			1.0
698			40	60	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain