SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9783

Length: 341 nt

UniGene Fasta

>biog3_v1.0_unigene9783
AATGTATTTTCAAAGTGTTTTGTCATAGCTAATAGAAGAGAGGATGATAGGAGAAGATCAGAGGATCAGCAAGGGAAAGAACATGACAGGTCCAACTTACATACCCCTAGCAAAAACCATTATGGAATCGCAGACGAAAAGAGGTTTTGGAAAAACCATCTTGGTAAAGTGAAGCCGGAAGGTGCACCCATTATTTTGGTTCCGAGTGCCTTCCAGACCTTGTTGAATATATACAATGCAAGAGACTTTCTGGAGGATGGGATCTATGTTGCACCTGATGTCAAGGCCAAGCAGATGCCCAAGAAGCCTGAATGTGTTACGATACAGAGGAAGATCACATT

Ace file of the UniGene biog3_v1.0_unigene9783

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3470	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	PAF1 complex component n=1 Tax=Populus trichocarpa RepID=B9HUU3_POPTR	-	-	50%
FL-Next	tr=PAF1 complex component; subsp. trichocarpa).	-	-	69%
Blast2go	rna polymerase ii assessory factor cdc73p	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	67%
Blast2go	histone H3-K4 methylation	GO:0051568	Biological Process	67%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	67%
Blast2go	protein binding	GO:0005515	Molecular Function	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA polymerase II accessory factor, Cdc73	IPR007852	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9HUU3

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 113 - 405

Fln protein: NVFSKCFVIANRREDDRRRSEDQQGKEHDRSNLHTPSKNHYGIADEKRFWKNHLGKVKPEGAPIILVPSAFQTLLNIYNARDFLEDGIYVAPDVKAKQMPKKPECVTIQRKIT

Protein Length: 114

Fln nts: AATGTATTTTCAAAGTGTTTTGTCATAGCTAATAGAAGAGAGGATGATAGGAGAAGATCAGAGGATCAGCAAGGGAAAGAACATGACAGGTCCAACTTACATACCCCTAGCAAAAACCATTATGGAATCGCAGACGAAAAGAGGTTTTGGAAAAACCATCTTGGTAAAGTGAAGCCGGAAGGTGCACCCATTATTTTGGTTCCGAGTGCCTTCCAGACCTTGTTGAATATATACAATGCAAGAGACTTTCTGGAGGATGGGATCTATGTTGCACCTGATGTCAAGGCCAAGCAGATGCCCAAGAAGCCTGAATGTGTTACGATACAGAGGAAGATCACATT

Fln Alignment:

Contig9783___EGAPIILVPSAFQTLLNIYNARDFLEDGIYVAPDVKAKQMP-KKPECVTIQRKIT
B9HUU3_________________EGVPIILVPSAFQTLITIYNVKEFLEDGIFIPTDVKAKQMKGPKPECVTVQKKFS

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain