SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9739

Length: 1018 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9739

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3987	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	MYB transcription factor MYB93 n=2 Tax=Glycine max RepID=Q0PJJ8_SOYBN	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	myb family transcription factor	-	-	59%

Source	GOs	Term	Type	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	59%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	59%
Blast2go	nucleus	GO:0005634	Cellular Component	59%

Source	InterPros	Term	Type	Identity
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3		IPR014778	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV60

Fln msg: your sequence is shorter than subject: 310 - 390

Fln protein: MSSTSSNSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNFVITRTPTQVASHAQKYFIRQSNMTRKKRRSSLFDMTPDPSSTAVSVEDYPKVASIDPICDSSLQNQILPNSHSVCDNSSQNQMLPTGNTGCDNSVQNQMLPTDLSSVFNQGPLVEPNNGAPLSSQPASDQEFESNYSEKTAEVENSFSQCAAAMACGVPMTFPGFMAPLLPFPFPVWPGFRPATTELPPNSNIFKPRAEIPKAPVNIIDETGISKLSIGDPPGSIEPSGLSLKLLNKPSRQSAFHTNPALNDNGFSSSGNAIHVV*

Protein Length: 311

Fln nts: AATGTCCTCCACTTCCTCCAATTCTCGCGAGCGGAAGAAAGGTGTGCCATGGACAGAGGAGGAACATAGAATGTTTTTGCTAGGTTTGCAGAAGCTTGGCAAAGGTGATTGGAGGGGAATAGCACGGAATTTTGTTATAACACGAACACCTACACAGGTAGCCAGCCATGCACAGAAATATTTTATTCGACAGAGCAATATGACTAGAAAGAAGAGACGTTCCAGTCTGTTTGACATGACACCGGACCCCAGTTCAACAGCAGTATCGGTAGAAGATTATCCAAAAGTTGCTTCCATTGATCCTATTTGTGATAGCTCTCTGCAAAATCAGATACTACCAAACAGCCATTCTGTTTGTGATAATTCTTCTCAAAACCAGATGCTACCTACTGGCAACACTGGTTGTGACAACTCTGTTCAAAATCAGATGTTACCTACCGACCTAAGTTCTGTGTTTAATCAAGGTCCTCTTGTTGAGCCTAATAATGGTGCACCGTTATCATCACAGCCAGCTTCGGATCAGGAATTTGAATCAAATTATTCGGAAAAGACTGCAGAAGTGGAAAACTCTTTTTCACAGTGTGCAGCAGCAATGGCTTGTGGTGTTCCAATGACATTTCCAGGTTTCATGGCACCATTACTTCCTTTTCCATTCCCAGTTTGGCCTGGTTTTAGGCCTGCTACAACAGAATTGCCACCAAATTCCAACATTTTTAAGCCAAGGGCTGAGATTCCAAAAGCTCCTGTGAATATTATCGATGAAACAGGCATCTCAAAGTTGAGTATTGGTGATCCACCTGGTTCTATTGAACCTTCAGGATTGTCACTGAAGCTTCTAAATAAACCTTCAAGGCAGTCAGCTTTTCATACAAATCCAGCTCTGAATGATAATGGCTTCAGTTCTAGTGGCAATGCGATTCATGTAGTTTAA___GTTAGTAAACAGGAAGAAGATATGGGATTGGATTCATTTTGGGTGTTACCCCATGCATACATCAATCTATTCAAAACAGACAACATT

Fln Alignment:

Contig9739___SSTSSNSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNFVITRTPTQVASHAQKYFIRQSNMTRKKRRSSLFDMTPDPSSTAVSVEDYPKVASIDPICDSSLQNQILPNSHSVCDNSSQNQMLPTGNTGCDNSVQNQMLPTDLSSVFNQGPLVEPNNGAPLSSQPASDQEFESNYSEKTAEVENSFSQCAAAMACGVPMTFPGFMAPLLPFPFPVWPGFRPATTELPPNSNIFKPRAEIPKAPVNIIDETGISKLSIGDPPGSIEPSGLSLKLLNKPSRQSAFHTNPALNDNGFSSSGNAIHVV
A9NV60_________________ASTSSNSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNFVITRTPTQVASHAQKYFIRQSNMTRRKRRSSLFDMTPDPSATAVSVEDYSKVSSIDPICDSSVQNQILPTGHTVCDSSSQNQILPTGHTVCDGSAQNQILPTSLSSAFNQGPLVESNNGAPLSSQTASDQEFESNNSENTAEAETSFSQGVAAMACGVPMVFPGFMAPLLPFPFPMWPGFRPATTELPPNSNIFKPRAEIPKAPMNIIDETGISKLSIGDPPGSIEPSGLSLKLLNKSSRQSAFHTNPALSDSGFSSSSNAIHVV

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
374	80			20	0.995493
375	80		20		0.995493
376		80		20	0.995493
377		80		20	0.995493
605		20		80	0.995493
748	16			83	0.994512
749		16	83		0.994512
751	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain