SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9727

Length: 190 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9727
ATAGTCAGGTTGTTCTTGTGCTTGTGGGAGAGGGTGTGAATCTGGATGAAATTGAGATGGAACTGGAGTAGCAATGCAAAAGTCTTCCACGTGGGCAGTTTGCTCTCCAAGGCTCTGTCTCATAGCTTTACTGTTCTTGCCCATAACAAGGCAGAGGCAATTTCCTTCTCTAATTTGTATGCACCTGAGC

Ace file of the UniGene biog3_v1.0_unigene9727 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18516	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Histidinol dehydrogenase n=1 Tax=Picea sitchensis RepID=A9NV24_PICSI	-	-	90%
FL-Next	sp=Histidinol dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	histidinol dehydrogenase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to UV	GO:0009411	Biological Process	88%
Blast2go	pollen development	GO:0009555	Biological Process	88%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Histidinol dehydrogenase, conserved site	IPR001692	-	0.0	-
Sma3	Histidinol dehydrogenase	IPR012131	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV24

Fln msg: Overlapping hits, possible frame ERROR between 104 and 94, Distance to subject end: 110 aas, your sequence is shorter than subject: 63 - 491

Fln protein: SQVVLVLVGEGVNLDEIEMELE*QCKSLPRxxxxxSKALSHSFTVLAHNKAEAISFSNLYAPE

Protein Length: 64

Fln nts: ATAGTCAGGTTGTTCTTGTGCTTGTGGGAGAGGGTGTGAATCTGGATGAAATTGAGATGGAACTGGAGTAGCAATGCAAAAGTCTTCCACGTxxxxxxxxxxxxxxxTCCAAGGCTCTGTCTCATAGCTTTACTGTTCTTGCCCATAACAAGGCAGAGGCAATTTCCTTCTCTAATTTGTATGCACCTGAGC

Fln Alignment:

Contig9727___NLDEIEMELE*QCKSLPRxxxxSKALSHSFTVLAHNKAEAISFSNLYAPE
A9NV24_________________NLDEIEMELEKQCKSLPRxxxxAKALTHSFTVLARNKAEAISFSNLYAPE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
124	25			75	0.996473
128		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain