SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9703

Length: 1524 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9703 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3604	29/34
SustainPine v2.0	sp_v2.0_unigene7651	5/34

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9T066_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	af448201_1 alpha-xylosidase	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.2.1.2-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	72%
Blast2go	alpha-glucosidase activity	GO:0004558	Molecular Function	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycoside hydrolase, family 31	IPR000322	-	0.0	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKI6

Fln msg: your sequence is shorter than subject: 395 - 908

Fln protein: MTNTALKSVIKKRPFILTRSTFIGSGAHAAHWTGDNAATWDDLWYSIPTMLSFGLFGVPMVGADICGFLEDTTEELCNRWIQLGSFYPFARDHSEKGTKHQELYLWKSVTMSARKALGLRYRLLPYIYTLAFEAHTKGSPIARPLFFTFPEDPNTLGISTQFLLGKAVLVSPVLKQGARTVDAYFPKGTWYSLYNVSESITVESGTYVSLLAPLDTINVHVLEGTILPMQEMGMTTREASRSPFSLVVALGGRKESYGDLYVDNGEDLEMVIKHGKSSYIEFYADIVEEGVRLRSEVQMGEYAIGEGWLLENITVLGTTTAVRSHYADSYMKLEAIMDKMIVDVSASFSMKRIKTDFRPEMDRYNSLEVDVVLVISNLSLSIGKNFELVIPWEK*

Protein Length: 396

Fln nts: ATGACAAACACAGCATTGAAATCAGTAATAAAGAAGAGGCCATTCATACTAACCCGTTCTACCTTTATTGGATCAGGGGCCCATGCTGCACATTGGACAGGGGACAATGCCGCAACATGGGATGATCTCTGGTACTCCATACCTACAATGCTGAGTTTTGGATTGTTTGGAGTCCCAATGGTAGGTGCTGATATTTGTGGATTTTTAGAAGACACAACCGAAGAGCTTTGCAATAGGTGGATTCAATTAGGTTCCTTTTATCCTTTTGCTAGAGATCACTCAGAGAAGGGAACAAAGCACCAAGAGCTTTACCTGTGGAAATCAGTCACAATGTCTGCGAGGAAAGCATTAGGTCTGAGATACAGGCTTCTTCCATATATCTACACATTGGCATTTGAAGCTCACACTAAAGGATCTCCCATTGCAAGGCCTCTGTTCTTTACATTCCCTGAGGATCCTAATACACTGGGAATCAGCACCCAGTTTCTATTGGGTAAAGCGGTCTTGGTTTCCCCTGTTTTAAAGCAAGGAGCAAGGACTGTGGATGCTTATTTTCCAAAGGGAACTTGGTACAGTTTGTACAATGTATCAGAGTCGATAACAGTTGAGAGTGGCACATATGTTAGTCTTCTTGCTCCACTAGATACCATCAATGTCCATGTATTAGAGGGGACTATTTTGCCGATGCAAGAAATGGGTATGACAACTAGGGAAGCCAGTAGAAGCCCATTTAGTCTGGTGGTTGCTTTGGGTGGTAGGAAGGAATCATATGGGGACCTATATGTGGACAATGGAGAGGATTTGGAAATGGTAATAAAGCATGGCAAGTCAAGTTATATCGAGTTTTACGCAGATATTGTAGAGGAAGGAGTGAGACTGAGATCAGAAGTCCAAATGGGGGAATATGCAATTGGGGAAGGATGGCTTCTGGAGAACATTACAGTTTTGGGAACTACCACTGCTGTTCGTTCTCATTATGCTGATTCATACATGAAATTGGAGGCAATCATGGATAAAATGATTGTGGATGTTTCAGCATCATTCTCTATGAAGAGAATCAAAACTGATTTTAGACCTGAAATGGATCGTTATAATAGCCTTGAGGTTGATGTTGTTTTAGTGATTTCAAATCTGTCTCTTTCAATCGGCAAGAACTTTGAGCTTGTTATACCGTGGGAGAAATGA___TTGGGTAGTGCTGTGCGTTCACATGGTAAAATTGGACGCAAGGACGAGTTTCATCAATTGCCACACTTGTGTGTGGTGTGGTGTGTTCTTCTGCATTAACAGGGTAACCTACTACAAGGGGAGGACTCCTTGAACTTTGACTCTCCACCTAAATGTTGAATAACGTTCCGAACTAGTCATGGGACACTCACTGAATATTAAGTATAAATTTATATGGGTTTGTGCCAATAAAAACCTGGCCCTCAAGATCAACGATATAGAATAAAAACAATCTACGTTTCCCATGGTGGCGTGGCATTATGATATACATTAAACTGAACAAACAACCACATCTACATT

Fln Alignment:

Contig9703___TNTALKSVIKKRPFILTRSTFIGSGAHAAHWTGDNAATWDDLWYSIPTMLSFGLFGVPMVGADICGFLEDTTEELCNRWIQLGSFYPFARDHSEKGTKHQELYLWKSVTMSARKALGLRYRLLPYIYTLAFEAHTKGSPIARPLFFTFPEDPNTLGISTQFLLGKAVLVSPVLKQGARTVDAYFPKGTWYSLYNVSESITVESGTYVSLLAPLDTINVHVLEGTILPMQEMGMTTREASRSPFSLVVAL-------GGRKESYGDLYVDNGEDLEMVIKHGKSSYIEFYADIVEEGVRLRSEVQMGEYAIGEGWLLENITVLGTTTAVRSHYADSYMKLEAIMDKMIVDVSASFSMKRIKTDFRPEMDRYNSLEVDVVLVISNLSLSIGKNFEL
B8LKI6_________________THKALQNLLNKRPFVLTRSTFVGSGSYAAHWTGDNKATWEDLRYSISTILNFGMFGMPMVGADICGFYPDTTEELCGRWIQLGAFYPFSRDHSNLHSKRQELYLWDSVAKSARKALGLRYRLLPYLYTLNYDAHTTGAPIARPLFFSFPQDPETYGVTKQFLLGPGVLVSPVLYNSTTSVNAYFPKGSWYNLNDMTMAVK-SNGQYVTLQAPMDTINVHVYEGMILPMQRGGLTSTAARMTPFTLIVAFPLGFESTGGNAK--GHLFLDGGEDVEMKIAEGKSTYIDFSAESDGKKARLMSHVQNGAYALSQGWVVEKLIILG----LPSSHSSSQLAFQ-LDGKPFSSSSFTYSAQSHSTNI-------DKSQGGAIMDLNGLALPLGRNIDL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
1198	16			83	0.994512
1202		50	50		1.0
1222		16	83		0.994512
1223	16	83			0.994512
1225		83		16	0.994512
1245	20			80	0.995493
1246	20	80			0.995493
1249	80			20	0.995493
1258	16			83	0.994512
1261		83		16	0.994512
1321		50		50	1.0
1323	50		50		1.0
1324	50			50	1.0
1384	33			66	1.0
1385	66	33			1.0
1386	33		66		1.0
1387			66	33	1.0
1418	33		66		0.997452
1478	33		66		0.997452
1479		33	66		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
255	269	CACAC CACAC CACAC	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain