SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9694

Length: 956 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9694 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3089	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	pfam06217, GAGA_bind, GAGA binding protein-like family	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	basic pentacysteine 6	-	-	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	0.0	57%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	57%

Source	InterPros	Term	Type	e value	Identity
Sma3	GAGA binding-like	IPR010409	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRA8

Fln msg: your sequence is shorter than subject: 240 - 334

Fln protein: RGWQAYKAQLAQMAASPHLTQIGACSRDPRIFQTINIQHDCTYAIGATEFPALTTGTSELGPVLECEAAPKSSNEIVTREPKKGRRSKKNSHDVDGSIPQVPKSPSKKRRVRGQQSEAPNGVEVGSEGKDHENNSGNACAIYNPSLPIPYCSCTGANQPCYRWGNGGWQSACCTTMMSMYPLPMNPNKKGYRFPGRKMSAGAFKKLLVRLSLQGIDVTKSIDLIEHWAKHGTNRYVTIK*

Protein Length: 241

Fln nts: TCGTGGATGGCAGGCTTACAAAGCTCAATTAGCACAAATGGCTGCTTCTCCCCATTTAACTCAAATAGGTGCATGTAGTAGGGATCCAAGAATATTTCAAACGATCAATATTCAACATGATTGTACATATGCAATAGGAGCTACTGAATTTCCTGCCTTGACAACTGGAACTTCTGAATTAGGACCTGTCTTGGAATGTGAGGCAGCTCCAAAGTCCAGTAACGAGATAGTTACAAGGGAACCTAAAAAGGGAAGAAGGTCAAAGAAAAACTCCCATGATGTGGATGGAAGTATTCCTCAAGTACCAAAGTCACCTTCCAAGAAGAGGCGGGTACGAGGGCAGCAATCTGAAGCTCCAAATGGGGTGGAAGTTGGTTCAGAGGGAAAAGATCATGAAAACAACTCTGGTAATGCTTGTGCTATTTATAACCCTTCTTTGCCAATACCCTACTGTTCGTGTACTGGGGCAAACCAACCGTGTTACAGATGGGGAAATGGAGGTTGGCAGTCAGCTTGCTGTACTACAATGATGTCGATGTATCCATTACCTATGAATCCTAATAAGAAAGGCTATCGATTTCCAGGTCGAAAAATGAGTGCAGGTGCATTCAAGAAGCTATTGGTAAGGCTTTCGTTACAGGGAATTGATGTGACCAAGTCAATCGATTTGATTGAACACTGGGCAAAACATGGAACAAATAGGTATGTAACTATAAAGTAA___GCATTACTGGATATGTTGGATGTTGTCAAGTTCGTCTGTAAAAAGATAGCAAAATCACCCACAAAGCACAATAACAACGGTTAAATAAACTATCATGCTTTAACACCTGGGTTTATTGGATGAGCTTATTGAAGCTTGGCAATAGTTTTCTGGAGCCATTGATTCTTCCATCTTCATATTGTTACAGTCCAGACCGTTTTTACATTGATGATTAATGTGTTAGCATTTGTAGAGT

Fln Alignment:

Contig9694___RGWQAYKAQLAQMAASPHLTQIGACSRDPRIFQTINIQHDCTYAIGATEFPALTTGTSELGPVLECEAAPKSSNEIVTREPKKGRRSKKNSHDVDGSIPQVPKSPSKKRRVRGQQSEAPNGVEVGSEGKDHENNSGNACAIYNPSLPIPYCSCTGANQPCYRWGNGGWQSACCTTMMSMYPLPMNPNKKGYRFPGRKMSAGAFKKLLVRLSLQGIDVTKSIDLIEHWAKHGTNRYVTIK
B8LRA8_________________RGWQAYKAQLAQMAASPHLTQIGACSRDPRIFQAINIHHDCTYGIGANEFPALTTGTSELGPVLECEAALKSSSEIVTREPKKGRRSKKNSQDVDGSIPLVPKSPSKKRRVRGQQSETPNGVEVGSEGKDCENNSAKSCVVYNPSMPIPYCSCTGANQPCYRWGNGGWQSACCTTMMSMYPLPMNPNKKGYRFPGRKMSAGAFQKLLVRLSLQGIDVTKPIDLKEHWAKHGTNRYVTIK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
94	33			66	0.997452
99	33	33		33	0.997753
286	66			33	0.997452
287	33			66	1.0
289		33	66		1.0
290	33			66	0.997452
424	16			83	0.994512
425		83		16	0.994512
427	83			16	0.994512
568	33		66		0.997452
841		85		14	0.993533
869	16			83	0.994512
901	25			75	0.996473
902		25		75	0.996473
904	75			25	0.996473
905	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain