SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9691

Length: 504 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9691
TACAGCATTCTGTTATTTGGTCGCAGCAATGGGTTTACAATTTTTATGGAGTTTTGGATTAGCAGCTCTTGATGCGTATGCATTGTTAATAAAGAGAGGCTTACGTAATCCTGTTTTAGTGAGCTTGTTTGTGGTGGGAGACTGGGTTACAGCTACACTCTCTCTTGCAGCGGCCTGCTCTACAGCAGGAGTAACTGTTCTATTTGATAATGATTTGTCATTTTGTGCTCAAACACATTGCCACAGATATCAAATTTCAGCTGCAATGGCTTTTATGAGTTGGGTGTTGATTGGGCTGTCATCCCTTGTAACATTTTGGTTACTTGCTAACGGGTGACTTGAGCTTTATTAAATTGTTTTCAATCATATTTGTGGAATTTGTTTGGGTAATGTGCAGTTGCATTACCTTCTTCTCTTGTATAAAGGTTGAAATCCCACATCCAGTTATTTGTAATTGCATTACATTATTGCATTGTATAAGGTTTGAAATTTTACTGTGACATT

Ace file of the UniGene biog3_v1.0_unigene9691 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8989	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF588 multi-domain protein	-	-	2.0e-31	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	uncharacterized protein	-	-	0.0	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0497, trans-membrane plant	IPR006702	-	0.0	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACW4

Fln msg: your sequence is shorter than subject: 112 - 151

Fln protein: TAFCYLVAAMGLQFLWSFGLAALDAYALLIKRGLRNPVLVSLFVVGDWVTATLSLAAACSTAGVTVLFDNDLSFCAQTHCHRYQISAAMAFMSWVLIGLSSLVTFWLLANG*

Protein Length: 113

Fln nts: TACAGCATTCTGTTATTTGGTCGCAGCAATGGGTTTACAATTTTTATGGAGTTTTGGATTAGCAGCTCTTGATGCGTATGCATTGTTAATAAAGAGAGGCTTACGTAATCCTGTTTTAGTGAGCTTGTTTGTGGTGGGAGACTGGGTTACAGCTACACTCTCTCTTGCAGCGGCCTGCTCTACAGCAGGAGTAACTGTTCTATTTGATAATGATTTGTCATTTTGTGCTCAAACACATTGCCACAGATATCAAATTTCAGCTGCAATGGCTTTTATGAGTTGGGTGTTGATTGGGCTGTCATCCCTTGTAACATTTTGGTTACTTGCTAACGGGTGA___CTTGAGCTTTATTAAATTGTTTTCAATCATATTTGTGGAATTTGTTTGGGTAATGTGCAGTTGCATTACCTTCTTCTCTTGTATAAAGGTTGAAATCCCACATCCAGTTATTTGTAATTGCATTACATTATTGCATTGTATAAGGTTTGAAATTTTACTGTGACATT

Fln Alignment:

Contig9691___TAFCYLVAAMGLQFLWSFGLAALDAYALLIKRGLRNPVLVSLFVVGDWVXXXXXXXXXXXXAGVTVLFDNDLSFCAQTHCHRYQISAAMAFMSWVLIGLSSLVTFWLLAN
D5ACW4_________________TAFCYLAAAMALQFLWSFVLATIDVYALLIKRGLPNSILLSLFVVGDWVTATLSLAAACSTAGITVLFDKDLNYCDQMHCRRYQLSATMAFFSWVLIAISSLITLLLLVS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
257	16		83		0.994512
260	83		16		0.994512
363	25	75			0.996473
366			75	25	0.996473
406	33			66	0.997452
407	66	33			0.997452
409			66	33	0.997452
410		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain