SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9678

Length: 1085 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9678

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7594	22/24
SustainPine v2.0	sp_v2.0_unigene7893	2/24

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to zinc finger (C3HC4-type RING finger) family protein n=1 Tax=Vitis vinifera RepID=UPI000198426A	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	protein binding	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	85%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Zinc finger, RING-CH-type	IPR011016	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKG1

Fln msg: your sequence is shorter than subject: 310 - 334

Fln protein: MSMKTEVQLEHRSEHDVNDTDSAPLLQPPSITLADKGNEIDDEESNSSSAASCRICLELEGCDPDDELIAPCLCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRAEVPEDYSLRKLKFRIFVARDVLLVFLAVQTMIALMGGIAYLMDTNGQFRNSFSDGWDRLLSKHPIPFYYCFGVFVFFVILGIGGLIVHCSSVNNNDPCMAGCRNCCYGWGILDCFPASMEACGALLVIFVIIFAILGIAYGLLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGHYTPPKLDPEHEERLKSLKLL*

Protein Length: 311

Fln nts: CCTTATAAATTGTCTGGCCTGCAATTCTTTATCTGAAGACTTGGTAATTTTTAAGCGTTAAAGTTGTGGCAACTGGGACTTTTA_-_ATGTCAATGAAAACGGAAGTGCAATTGGAGCATCGTAGCGAGCACGACGTTAACGATACAGATTCAGCTCCTCTTTTGCAGCCACCGTCAATTACATTGGCCGATAAAGGCAACGAAATTGATGATGAAGAAAGTAATAGCTCATCCGCTGCTTCCTGCCGAATCTGTCTCGAGTTAGAGGGCTGTGATCCAGATGATGAATTGATAGCTCCTTGCTTGTGCAAGGGCACACAACAATTTGTTCACCGATCATGTCTTGATCACTGGCGCTCTGTGAAGGAAGGGTTTGCATTTTCACATTGCACTACCTGTAAAGCTCAGTTTCATCTGCGGGCTGAAGTACCAGAAGATTACTCATTGCGTAAACTAAAATTTAGGATCTTTGTTGCACGAGATGTCCTCCTTGTGTTTTTGGCAGTGCAAACAATGATCGCTCTCATGGGTGGCATTGCATACTTGATGGACACAAATGGGCAATTCAGAAATTCATTCAGTGATGGATGGGACCGACTGTTATCAAAGCATCCAATACCATTTTATTATTGTTTTGGTGTTTTTGTTTTCTTTGTAATCCTGGGTATTGGAGGTCTCATAGTGCATTGCTCCTCAGTCAACAACAATGATCCATGCATGGCTGGCTGTCGGAATTGTTGTTATGGGTGGGGCATTTTGGACTGTTTCCCGGCATCGATGGAAGCATGTGGAGCACTCCTGGTCATTTTCGTGATTATTTTTGCTATACTTGGCATTGCCTATGGTCTTCTGGCTGCAACAATGGCAATTCAGAGAATATGGCAAAGACACTATCACATATTGACAAAGAGAGAGCTCACAAAGGAATATATTGTCGAAGACTTGCATGGACACTATACACCTCCTAAGCTAGACCCGGAACATGAAGAACGTTTGAAGTCCTTGAAGCTTCTGTAG___CCACCCTTTCAACATTAATATAATATGTAAACTTCAATATGTTCTCTGATGACATTTTTCTTCTAATTGGC

Fln Alignment:

Contig9678___DVNDTDSAPLLQPPSITLADKGXXXXXXXXXXXXXXX-----CRICLELEGCDPDDELIAPCLCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRAEVPEDYSLRKLKFRIFVARDVLLVFLAVQTMIALMGGIAYLMDTNGQFRNSFSDGWDRLL--SKHPIPFYYCXXXXXXXXXXXXXXXXXHC--SSVNNN--DPCMAGCRNCCYGWGILDCF-----------PASMEACG----------------------XXXXXXXXXXXXXXXXXXXXXXTMAIQRIWQRHYHILTKRELTKEYIVED-----LHGHYTPPKLDPEHEERLKSLKLL
A9NKG1_________________DPSSSSSSPLIPPTQEAVAAGGLLTMERDTIDLEAGPGDQIQCRICLETDGRD----FIAPCKCKGTSKYVHRACLDHWRAVKEGFAFAHCTTCKAPYHLRVHAAADRKWRTLKFRFFVTRDILFIFAAVQLVIASLSYSVYLIDHHQQ-------DWLRLAWGFESKIRFYYICGALLFFALLGLSGCFITCYDRRVRSDLAQPCRELCLCCCHPGVCADCHLPGTICMWTDCAACFESCAGTAGECGTCLGGAGEAGAPILVIVGLVTLGLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDDEILDSDWNPPPLPTEHVQQLKSLGLL

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
85	66		33		0.997452
86	66			33	0.997452
128	16	83			0.994512
130		83		16	0.994512
132	83			16	0.994512
294	20	80			0.995493
297	25	75			0.996473
844		14		85	0.993533
863	14		85		0.993533
912		20	80		0.995493
915		80		20	0.995493
1029	33	66			0.997452
1032			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain