SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9676

Length: 1067 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9676 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene624	13/13

Source	Descriptions	Term	Type	Identity
AutoFact	Protease degQ, putative n=1 Tax=Ricinus communis RepID=B9SF71_RICCO	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	serine-type peptidase	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine endopeptidases.	EC:3.4.21.-	-	0.0	89%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	photosystem II repair	GO:0010206	Biological Process	89%
Blast2go	protein catabolic process	GO:0030163	Biological Process	89%
Blast2go	proteolysis	GO:0006508	Biological Process	89%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	89%
Blast2go	serine-type endopeptidase activity	GO:0004252	Molecular Function	89%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	89%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	PDZ domain	IPR001478	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap	IPR001254	-	-
Sma3	Peptidase S1C, HrtA/DegP2/Q/S	IPR001940	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVJ7

Fln msg: STOP codon was not found. Distance to subject end: 10 aas, your sequence is shorter than subject: 355 - 463

Fln protein: MYIQSNFWVWCASLSVMISVATVNIDDANAYVVTPRRKLQTDELTTVNLFRENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFIWDGKGHIVTNYHVIRGASDLRVTLGDQSVYEAKVIGYDQDKDVAVLGIDAPKDKLRPVPVGSSRDLLVGQKVYAIGNPFGLDHTLTTGVISGLGREINSAATGRPILDVIQTDAAINPGNSGGPLLDSSGFLIGINTAIYSPSGASAGVGFSIPVDTVSSIVDQLVKYGKITRPILGIRFAPDQSVEQLGVTGVLVLDAAPDGPAGKAGLRPTKRDAYGRLILGDIITTVNGQKVNNGSDHYKILDRCKVGDKVMVEVLRGDQKENVLH

Protein Length: 356

Fln nts: AATGTACATTCAATCGAATTTTTGGGTATGGTGTGCTTCTTTGTCTGTAATGATTTCTGTTGCAACAGTGAACATTGATGATGCCAATGCCTATGTGGTAACTCCACGCAGAAAGCTGCAAACAGATGAGTTAACTACAGTCAATCTCTTCAGAGAGAATACTCCATCAGTGGTTTATATCACCAATCTTGCTGTCAGGCAAGATGCGTTTACATTGGATGTTTTAGAGGTTCCTCAAGGTTCTGGATCTGGATTTATTTGGGATGGTAAAGGGCATATTGTGACAAACTACCATGTCATTCGAGGTGCCTCCGATTTAAGGGTGACCCTTGGTGACCAATCAGTATATGAAGCAAAGGTGATTGGATATGATCAAGATAAAGATGTTGCAGTTTTAGGCATTGATGCCCCAAAAGACAAATTGAGGCCTGTACCTGTTGGAAGCTCAAGAGACCTTTTAGTAGGGCAGAAAGTGTATGCCATTGGAAATCCTTTTGGCCTTGACCACACTTTGACAACTGGTGTTATCAGTGGACTTGGACGGGAGATTAATTCAGCTGCAACTGGTCGTCCAATACTAGATGTAATACAAACAGATGCAGCTATAAATCCTGGGAACAGTGGAGGTCCTTTACTTGACAGTTCTGGATTTTTGATAGGCATAAACACTGCTATCTACTCTCCTTCAGGAGCATCGGCTGGAGTTGGCTTTTCCATTCCAGTAGATACTGTAAGTAGCATTGTCGATCAATTGGTTAAGTATGGAAAAATTACGAGACCCATACTTGGCATCAGGTTTGCACCAGATCAATCAGTTGAGCAACTAGGTGTTACTGGAGTGCTTGTGCTAGATGCTGCTCCAGATGGGCCAGCAGGAAAAGCAGGTCTACGACCAACTAAACGAGATGCTTATGGTCGCCTTATTTTGGGGGATATCATTACGACGGTAAATGGTCAAAAAGTCAACAATGGAAGTGATCACTACAAAATTCTTGACCGTTGTAAAGTAGGAGATAAGGTCATGGTTGAGGTTTTACGCGGAGATCAAAAGGAAAATGTCTTACATT

Fln Alignment:

Contig9676___ITNLAVRQDAFTLDVLEVPQGSGSGFIWDGKGHIVTNYHVIRGASD--------LRVTLGDQSVYEAKVIGYDQDKDVAVLGIDAPKDKLRPVPVGSSRDLLVGQKVYAIGNPFGLDHTLTTGVISGLGREINSAATG--RPILDVIQTDAAINPGNSGGPLLDSSGFLIGINTAIYSPSGASAGVGFSIPVDTVSSIVDQLVKYGKITRPILGIR
A9NVJ7_________________VVNLTVTQG---LRGMFLGRSIGSGTIIDSNGTILTNAHVVAEFTSAGVPYKGKVVVTLQDGRTFDGEVINADFHTDIAVVRINT-KVPLPAAKLGSSSKLRPGDWVIALGCPLSLQNTVTAGIVSYVDRKSSDLGLGGIRREYYYLQTDCAINEGSSGGPLVNLDGEVIGINT---MKALAADGVSFAIPIDSVIKTVEHFKKHGRVVRPWLGLK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
343	33		66		0.997452
345	66		33		0.997452
401	25	75			0.996473
706	14	85			0.993533
709	85			14	0.993533
729	16			83	0.994512
730		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain