SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9668

Length: 1120 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9668

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15338	45/73
SustainPine v2.0	sp_v2.0_unigene15768	9/73
SustainPine v2.0	sp_v2.0_unigene16065	7/73
SustainPine v2.0	sp_v2.0_unigene16151	1/73
SustainPine v2.0	sp_v2.0_unigene24777	4/73
SustainPine v2.0	sp_v2.0_unigene60886	3/73
SustainPine v2.0	sp_v2.0_unigene61057	1/73
SustainPine v2.0	sp_v2.0_unigene65332	2/73

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor sp\|P0CH05.1\|UBI2P_PETCR RecName: Full=Polyubiquitin; Contains: RecName: Full=Ubiquitin; Flags: Precursor emb\|CAA45621.1\| polyubiquitin [Petroselinum crispum] emb\|CAA45622.1\|	-	-	99%
FL-Next	sp=Polyubiquitin 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	99%
Blast2go	hexaubiquitin protein	-	-	99%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	99%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Ribosomal protein L40e	IPR001975	-	-
Sma3	Ribosomal protein S27a	IPR002906	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q3E7T8

Fln msg: your sequence is shorter than subject: 287 - 305

Fln protein: MSIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGDI*

Protein Length: 288

Fln nts: A_-_ATGTCAATTGACAATGTGAAAGCCAAGATACAGGACAAAGAAGGCATCCCTCCAGACCAGCAGCGCCTGATCTTTGCTGGTAAGCAGCTCGAAGATGGCCGAACTCTTGCTGACTACAATATTCAGAAGGAATCTACCCTGCATCTTGTCCTCCGTCTGAGAGGTGGCATGCAGATCTTTGTCAAAACCCTCACAGGTAAGACCATTACTTTGGAAGTGGAGAGCTCGGACACCATCGACAATGTGAAGGCTAAGATACAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGTCTAATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACTCTTGCTGACTACAATATCCAGAAAGAATCCACCTTGCACCTGGTCCTACGTCTGAGGGGTGGTATGCAGATCTTTGTTAAAACTCTAACCGGCAAGACGATCACCTTGGAAGTTGAAAGCTCTGATACTATTGATAATGTTAAGGCGAAGATCCAGGATAAGGAAGGCATCCCTCCAGACCAACAGAGGCTCATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGGACCTTGGCAGATTACAACATTCAGAAGGAATCAACGTTGCACCTCGTGCTTCGTTTAAGAGGTGGTATGCAGATTTTCGTGAAAACCTTGACTGGGAAAACTATTACCTTGGAGGTAGAGAGCTCCGACACCATTGATAATGTGAAGGCGAAAATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAGAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGACGTACTTTGGCTGATTATAACATTCAGAAGGAGTCTACTCTGCATCTTGTGCTCCGACTTCGTGGTGGTGATATTTAA___CTGTTAAAGATATGCTGGTCTGTCTGGTTATGATTAAAAGGTGTGGTCTGTATCTGTTCGTGTTTATTATATTGTGTGGACTATGTTATTGTTTGTATTAGCGTATGTGCTGTTACTGGATGCCAACACTGGTTTTCTGGCTGGTACTGTCAACTTTGGAAGTGACTATGCCCTCTGAAAACAAATTTCGGTGAATGATTAAGACTTATATTATTGTAATTCAAGTATTTTAAATGGTGCTGCATTTTTAAAATTGAC

Fln Alignment:

Contig9668___SIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q3E7T8_________________TIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
924	14		85		0.993533
925	14			85	0.993533
927			14	85	0.993533
928	85			14	0.993533
952		14		85	0.993533
953	14		85		0.993533
954	14			85	0.993533
955		14		85	0.993533
956	16			83	0.994512
957			83	16	0.994512
964		80		20	0.995493
1050	33			66	0.997452
1069	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain