SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9642

Length: 453 nt

UniGene Fasta

>biog3_v1.0_unigene9642
TTTTGGTGTCAACATAGATTCCTCGTCTTTGATTGTTCCTAATACAGTATCGAACATGAGAAGTATTGGCAGCAGTACTGATGCAGTCATGCAATTTGGTGTTTCTAATTATTTGAATGCACCTTCTTGTGCTTCCGGTTCCAATATTTCATTGAATTCAGACATCAGTGCTTCTGCATGTTTAGATGAAAGTGGACTTTTACCACCCACTGAAAATTTGGGACAGATGAATGCACCTACAAGAACCTTCATAAAGGTTTATAAGCAAGGGTCAGTCGGGAGATCGCTAGATATCTCACGCTTCAGCAGTTATCCAGAGCTGCGCAGTGAACTTGCCCGCATGTTTGGCCTAGAAGTAGGCCAGCTTGAGGACCCTCTAAGATCAGGCTGGCAGCTTGTATTTGTCGACAAGGAGAAGGATGCCCTTCTCCTTGGGGATGATCCTTGGGAGGA

Ace file of the UniGene biog3_v1.0_unigene9642

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17866	7/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	auxin response factor 3 [Cucumis sativus]	-	-	0.0	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Smr protein/MutS2 C-terminal	IPR002625	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Protein of unknown function DUF482	IPR007434	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Domain of unknown function DUF1771	IPR013899	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: Distance to subject end: 62 aas, your sequence is shorter than subject: 150 - 450

Fln protein: FGVNIDSSSLIVPNTVSNMRSIGSSTDAVMQFGVSNYLNAPSCASGSNISLNSDISASACLDESGLLPPTENLGQMNAPTRTFIKVYKQGSVGRSLDISRFSSYPELRSELARMFGLEVGQLEDPLRSGWQLVFVDKEKDALLLGDDPWE

Protein Length: 151

Fln nts: TTTTGGTGTCAACATAGATTCCTCGTCTTTGATTGTTCCTAATACAGTATCGAACATGAGAAGTATTGGCAGCAGTACTGATGCAGTCATGCAATTTGGTGTTTCTAATTATTTGAATGCACCTTCTTGTGCTTCCGGTTCCAATATTTCATTGAATTCAGACATCAGTGCTTCTGCATGTTTAGATGAAAGTGGACTTTTACCACCCACTGAAAATTTGGGACAGATGAATGCACCTACAAGAACCTTCATAAAGGTTTATAAGCAAGGGTCAGTCGGGAGATCGCTAGATATCTCACGCTTCAGCAGTTATCCAGAGCTGCGCAGTGAACTTGCCCGCATGTTTGGCCTAGAAGTAGGCCAGCTTGAGGACCCTCTAAGATCAGGCTGGCAGCTTGTATTTGTCGACAAGGAGAAGGATGCCCTTCTCCTTGGGGATGATCCTTGGGAGGA

Fln Alignment:

Contig9642___TENLGQMNAPTRTFIKVYKQGS-VGRSLDISRFSSYPELRSELARMFGLEVGQLEDPLRSGWQLVFVDKEKDALLLGDDPWE
C0PTP3_________________THNRPQSNS-TRSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFNIE-GELEDP-NKGWQVVYTDNEGDMMLVGDDPWQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
361	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain