SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9632

Length: 289 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9632
AATGTATATGTTTCAAGCAATTTCTGCATATGATGGGATGGGGATCAAAGATGGGATAAATTGGTTAGTTGATGCCATGGAAAGAAGTAAACGCTTTGAAGTGTTAAGCCAGCGGGCAGATGTGGCTGTTGCTGTATAGTGTCTCCTTCAGAGTGTTCCATAATGCTTTGTTTCTCTTCTCCAACCATTTGGCCTTCAAAATATCCTGAAATGTATCAAATGTTGCCAAGGCCATATGGAATGTTTGGTCCGTAATCTCTTCTTTAAGGCTTCTGAAATTGCCAAGGTA

Ace file of the UniGene biog3_v1.0_unigene9632 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9879	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein 1 [Arabidopsis thaliana] ref\|NP_851175.1\| GTP-binding protein 1 [Arabidopsis thaliana] gb\|AAA87882.1\| GTP-binding protein ATGB1 [Arabidopsis thaliana] dbj\|BAA97464.1\| GTP-binding protein-like [Arabidopsis thaliana] gb\|AAO42836.1\| At5g5	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	arf-like gtpase	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	GTP binding	GO:0005525	Molecular Function	88%
Blast2go	intracellular	GO:0005622	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NYS0

Fln msg: your sequence is shorter than subject: 46 - 203

Fln protein: MYMFQAISAYDGMGIKDGINWLVDAMERSKRFEVLSQRADVAVAV*

Protein Length: 47

Fln nts: AATGTATATGTTTCAAGCAATTTCTGCATATGATGGGATGGGGATCAAAGATGGGATAAATTGGTTAGTTGATGCCATGGAAAGAAGTAAACGCTTTGAAGTGTTAAGCCAGCGGGCAGATGTGGCTGTTGCTGTATAG___TGTCTCCTTCAGAGTGTTCCATAATGCTTTGTTTCTCTTCTCCAACCATTTGGCCTTCAAAATATCCTGAAATGTATCAAATGTTGCCAAGGCCATATGGAATGTTTGGTCCGTAATCTCTTCTTTAAGGCTTCTGAAATTGCCAAGGTA

Fln Alignment:

Contig9632___YMFQAISAYDGMGIKDGINWLVDAMERSKRFEVLSQRADVAVAV
A9NYS0_________________YMFQAISAYDGLGIKDGINWLVDAMERSKRFELLRQRADVAVAV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
14		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain