SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9631

Length: 1114 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9631

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16240	28/30

Source	Descriptions	Term	Type	Identity
AutoFact	putative wound-responsive protein [Arabidopsis thaliana] ref\|NP_001031068.1\| putative wound-responsive protein [Arabidopsis thaliana] gb\|AAK59521.1\| unknown protein [Arabidopsis thaliana] gb\|AAL15188.1\| unknown protein [Arabidopsis thaliana] dbj\|BAH20173.	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	bifunctional nuclease in basal defense response 1	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	0.0	77%
Blast2go	nuclease activity	GO:0004518	Molecular Function	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Bifunctional nuclease	IPR003729	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUL3

Fln msg: your sequence is shorter than subject: 178 - 330

Fln protein: IVLEMPSVMLMAAIRNVQVARPTVYQILKDMIEKMGYEVKLVRVTRRVHEAYFAQLYLAKIGDETQRVNFDLRPSDAINIAVRCKVPIQVNKYLAYCDGVRIVSDPAKLLSRTLGPEALRSKELDRPDGNPCFATEEFDLVQKMITAATEERYVDAAQWRDELNQLRSKKSNRTKQK*

Protein Length: 179

Fln nts: ATTGTCTTAGAGATGCCCAGTGTAATGTTGATGGCAGCAATTCGCAATGTCCAAGTTGCTAGACCAACAGTTTATCAGATTTTGAAGGACATGATTGAGAAGATGGGATATGAAGTAAAACTTGTTCGAGTAACGCGAAGAGTACATGAAGCTTACTTTGCACAATTATACCTGGCTAAGATAGGAGATGAGACACAAAGAGTTAATTTTGACCTCCGCCCTTCAGATGCCATCAATATTGCAGTAAGGTGCAAGGTACCAATACAAGTGAATAAATATCTAGCTTACTGTGATGGTGTGAGAATTGTTAGTGATCCTGCTAAGCTACTGTCACGAACCTTAGGGCCAGAGGCTTTAAGAAGTAAAGAGTTAGACAGGCCTGATGGCAATCCCTGTTTTGCTACGGAGGAGTTTGACCTTGTCCAGAAAATGATAACTGCTGCCACTGAAGAGCGATATGTTGATGCAGCCCAGTGGAGAGATGAACTCAATCAACTCCGTTCCAAAAAAAGTAACCGGACAAAGCAGAAGTAA___TCTATCTCGAAGGACCAAGGCAATGGCAACCTCTGTACATAGTTGCATTAGGGAGCACATATTCCGCGTTTCATAGGATGATAACTAATCCTAAATAGTACTTGCATATATTGTAAAAGATTTGCCGTATTATAAGAACCTAATATATTACTGTTTTTGGTTTCTAGTATTACATACGATTAATTAAACTATTTACCCAAATGGATATTTGCGAATCAATCCATTCAGCGATTTTTTAATTTGCTTGGGTCTGCAACCTCGATTTCTGTATGTCAGCAAGATTGTGCGCATGTAAACCTTCCAAGCCACGGTAAGAACATAGGTTTCTACTGAGCACGGAGTTATGGTTGAGACTTGAGCTTCATCAGCTGAGGAGTGAATCAATTGGGAAATTGCAATCTGGCACAAAGTTGTTTATTTCATGGGCGTGGAATATTGTAAATATGAAAGTATTGCCAACTGAAAGACCCCTGGTCATTTATTTATATTTAACAATGCATGGCATTTACATTGCATGCTTTGACATACGAGCATTGCCATCTGAAAGACCCCTGGTCTTTTATTTATATTAAACAACATT

Fln Alignment:

Contig9631___IVLEMPSVMLMAAIRNVQVARPTVYQILKDMIEKMGYEVKLVRVTRRVHEAYFAQLYLAKIGDETQRVNFDLRPSDAINIAVRCKVPIQVNKYLAYCDGVRIVSDPAKLLSRTLGPEALRSKELDRPDGNPCFATEEFDLVQKMITAATEERYVDAAQWRDELNQLRSKKSNRTKQK
A9NUL3_________________IVLEMPSVMLMAAIRNVQVARPTVYQILKDMIEKMGYEVKLVRVTRRVHEAYFAQLYLAKIGDETQRVSFDLRPSDAINIAVRCKVPIQVNKYLAYCDGVRIVSDPAKLLSRTLGPEALRSKELDRPDGNPCFATEEFDLVQKMITAATEERYVDAAQWRDELNQLRSKRSDRTKQK

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
271	33			66	0.997452
272		33	66		0.997452
274	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain