SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9620

Length: 1412 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9620

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25913	21/71
SustainPine v2.0	sp_v2.0_unigene29888	50/71

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc ion binding protein [Arabidopsis thaliana] gb\|AEE83354.1\| zinc ion binding protein [Arabidopsis thaliana]	-	-	1.0e-24	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	zinc ion binding protein	-	-	9.78607e-28	58%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3	UV excision repair protein Rad23	IPR004806	-	-
Sma3	Heat shock chaperonin-binding	IPR006636	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR014761	-	-
Sma3	XPC-binding domain	IPR015360	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQD9

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 75 aas, putative chimeric sequence, your sequence is shorter than subject: 329 - 403

Fln protein: MKVSVRIFMGKHFDIEVQPTDTVLNVKKQIEQIQGAQNHPSEQQRLIYKRKELMDKTTIKQNKVSENAILVVKLSKMLTYRGMTYHVQNPHTEEFSAADIVWIKGVGKKGIVHDVAVIPYYRLDNFVKGEGSSARTKFCLTACKTKEDSSDKKRVDAILKTATYCCSYGIEDHRKGGTIRPSRKCTELSKKKCRGRALIKQGCLSNFCMARYVACPFVAFIKYKKREHVDKSGSACCHKPLDDKAIGTQFMTKPSNHGGTDPPLTLGPSNHKLTLGPSNHKGINLPPVWNVKKIRSKLGTQGKVSTAEGDNKANGHKIASDSPTMRAT*

Protein Length: 330

Fln nts: GTTGGTTTCTTTGGCAGTGCAAGCGATATTGTGTCTCGTTTTGCCTGCTGTGCGAACGGTTTAGCACTTCGGAGGCCGGTAGGGACCGAATTCGGGCGTCAGG_-_ATGAAGGTTTCTGTCCGAATCTTCATGGGTAAACACTTTGATATAGAGGTGCAGCCCACGGATACTGTTTTAAATGTTAAGAAACAAATAGAGCAAATTCAAGGAGCACAAAATCACCCGAGTGAACAGCAGCGGCTGATTTATAAGCGCAAGGAGCTGATGGATAAAACCACTATTAAACAAAACAAAGTCAGTGAGAATGCAATCCTTGTGGTTAAGCTGTCTAAGATGTTAACATACCGTGGGATGACATATCATGTGCAAAACCCACACACTGAAGAGTTTTCAGCAGCTGATATTGTCTGGATTAAGGGTGTGGGTAAGAAAGGAATTGTTCATGATGTTGCTGTCATTCCATATTACAGATTGGATAATTTTGTTAAGGGAGAGGGTTCCAGTGCTCGAACCAAATTTTGTCTTACTGCATGTAAAACAAAAGAAGACAGTTCAGATAAGAAAAGAGTTGATGCCATTCTTAAAACTGCAACATATTGTTGCAGTTATGGCATTGAAGACCACAGGAAGGGTGGAACGATTCGGCCTAGCAGAAAGTGTACTGAACTATCAAAGAAAAAATGTAGAGGACGAGCACTTATAAAGCAAGGCTGTTTGTCTAATTTTTGTATGGCACGCTATGTTGCTTGCCCATTTGTTGCCTTTATAAAATACAAGAAACGAGAGCATGTTGATAAGTCTGGTTCTGCTTGTTGCCACAAACCGCTTGATGACAAGGCCATTGGAACACAGTTCATGACAAAGCCATCAAACCATGGAGGTACAGACCCTCCACTTACACTGGGGCCATCAAACCACAAACTTACACTGGGGCCATCAAACCACAAAGGTATAAACCTTCCACCTGTGTGGAATGTCAAGAAGATTAGATCTAAATTAGGAACTCAAGGTAAAGTGAGTACTGCAGAAGGTGACAATAAAGCTAATGGCCACAAAATTGCCTCGGACTCTCCAACCATGAGGGCCACTTGA___GCAGACAAGTTTCTGTCGGGAGTTTCTTCGCCTCTGTTACACGCATTTAGAATCTTGAATTTGCACCTTCTTTTATATTTTCTCTCGGCTAGATTTAACCTTTAACTGGAGACTCTGTTCTTTGTCTTTTATGCATTTAGTATTGATCTTGGACTTGGTTTGCATTTCGACATTGCATTTATGTTGGATATACTATTTCATCTCATATTATTTATTTAACTCTGTATTGCTCTTTTATTTCCATAGTCAAGTTTTCACTAATGCAATCACAATGGCAGCATTCTCTGTATTACTCTTTGATTGTTATGATTTCACATATATA

Fln Alignment:

Contig9620___MKVSVRIFMGKHFDIEVQPTDTVLNVKKQIEQIQGAQNHPSEQQRLIYKRKELMDKTTIKQNKVSENAILVVKLSK
C0PQD9_________________MKVSVKTLKGNHFDIEVQPTDTVLNVKKQIEQVQGAQTYPSEQQLLIYQGKVLKDETTIEENKVTENTFLVVMLSK

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1164	20		80	0.995493
1165		20	80	0.995493
1168	80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain