SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9618

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9618
AAAGGAGGGAATGTACAGAAGAAAATAGAAGAGAAGACTGGTGTAAAACTTTGCTTTGTCTCGACTCCAAAGAAGACCACTACTGTTGTTGTGGATGGGCCATCTGTCAAAAGTGTTCACACAGAACTTGTAGAGAAGCTCACGGACTTTCAAAACTCTGTTCTAGATTTAAGTGGTAGTGCTGGCAAAGAGGAAAGTGACTCTGACAGCGATTCAAATGCTGAATCTTCCGACGATGATTTGAAGTCAATCTCAATGTAGATGGTGATAATGTACATGTCAAGTTAGATGTCAAGAGCATCATTCAGGATGTGAATGCAAAATCACAAACACATT

Ace file of the UniGene biog3_v1.0_unigene9618 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4295	3/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AKAP7_NLS domain containing protein	-	-	3.0e-12	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	eukaryotic protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Predicted eukaryotic LigT	IPR009210	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD13

Fln msg: Separated hits, possible frame ERROR between 189 and 246, Distance to subject end: 20 aas, your sequence is shorter than subject: 112 - 292

Fln protein: KGGNVQKKIEEKTGVKLCFVSTPKKTTTVVVDGPSVKSVHTELVEKLTDFQNSVLDLSGSAGxxxxxxxxxxxxxxxxxxxxVNLNVDGDNVHVKLDVKSIIQDVNAKSQTH

Protein Length: 113

Fln nts: AAAGGAGGGAATGTACAGAAGAAAATAGAAGAGAAGACTGGTGTAAAACTTTGCTTTGTCTCGACTCCAAAGAAGACCACTACTGTTGTTGTGGATGGGCCATCTGTCAAAAGTGTTCACACAGAACTTGTAGAGAAGCTCACGGACTTTCAAAACTCTGTTCTAGATTTAAGTGGTAGTGCTGGCAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGTCAATCTCAATGTAGATGGTGATAATGTACATGTCAAGTTAGATGTCAAGAGCATCATTCAGGATGTGAATGCAAAATCACAAACACATT

Fln Alignment:

Contig9618___KGGNVQKKIEEKTGVKLCFXXXXXXXXXXXVDGPSVKSV--------------------------------HTELVEKLTDFQNSVLDLSGSAGKxxxxxxxxxxxxxxxxxxxVNLNVDGDNVHVKLDVKSIIQDVNAKSQT
D5AD13_________________KGGKVQKKIEEKTGAKLGFVSTPEKTTVVV-DGPSAKSVTTAAETIQQILEEAVKSPNLQYSHFISLPLAVHTELVEKLTDFQNSVLSLSGTAGKxxxxxxxxxxxxxxxxxxxVNLNVDRDNVRVKLDVKSIIQDVNAKSQT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain