SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9609

Length: 596 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9609 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1471	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	molybdenum cofactor sulfurase-like protein 1 [Oryza sativa Japonica Group]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	molybdenum cofactor sulfurase family protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	76%
Blast2go	Mo-molybdopterin cofactor sulfurase activity	GO:0008265	Molecular Function	76%
Blast2go	molybdenum ion binding	GO:0030151	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Molybdenum cofactor sulfurase, C-terminal	IPR005302	-	0.0	-
Sma3	MOSC, N-terminal beta barrel	IPR005303	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
278	33	66			0.997452
279	33	66			0.997452
363			33	66	0.997452
364		66		33	0.997452
366		66	33		0.997452
405		66		33	0.997452
489	25		75		0.996473
493		75		25	0.996473
509		33		66	0.997452
552		33	66		0.997452
585			66	33	0.997452
586		33		66	0.997452
593		66		33	0.997452
595	66		33		0.997452
596		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain