SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9592

Length: 420 nt

UniGene Fasta

>biog3_v1.0_unigene9592
AATGTATTTATCATACAACAAGCTTAGTGGGCTACATACCTGAAGAGCTTGCAAGCCTTGCAAATTTAGCCTTCTATTTCAACTTGTCAAACAATTTATTAAGTGGCCATGTACCTTTAGAACTAGGAACATTCGATAAGCTTCAAGCCATAGATATTTCGGCAAATCAAATAACTGGCTATATTCCAAGTATCGTCGGAAGCTGCAAAGAAGTAGCATATCTGAATCTTTCTTACAATGCACTTGAAGGTCCAATTCCAGTGTCAATCAGTGAACTTCTAAGTCTTCAAGACCTAGATCTCTCCTCCAACAATTTGTCAGGGGGAATACCCGTATCACTAGCAAATCTCACATTGCTCCACCACTTGAATTTTTCTTTCAACAAAGCTATCAGGAGAAGTCCCTAAAGGTGGAGACATT

Ace file of the UniGene biog3_v1.0_unigene9592

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10280	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21, receptor type precursor [Oryza sativa Japonica Group]	-	-	1.0e-34	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	31%
Blast2go	protein	-	-	2.46629e-43	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	2.46629e-43	68%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	2.46629e-43	68%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	2.46629e-43	68%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	2.46629e-43	68%
Blast2go	membrane	GO:0016020	Cellular Component	2.46629e-43	68%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Glutathione peroxidase	IPR000889	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3		IPR012335	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: your sequence is shorter than subject: 135 - 551

Fln protein: CIYHTTSLVGYIPEELASLANLAFYFNLSNNLLSGHVPLELGTFDKLQAIDISANQITGYIPSIVGSCKEVAYLNLSYNALEGPIPVSISELLSLQDLDLSSNNLSGGIPVSLANLTLLHHLNFSFNKAIRRSP*

Protein Length: 136

Fln nts: AATGTATTTATCATACAACAAGCTTAGTGGGCTACATACCTGAAGAGCTTGCAAGCCTTGCAAATTTAGCCTTCTATTTCAACTTGTCAAACAATTTATTAAGTGGCCATGTACCTTTAGAACTAGGAACATTCGATAAGCTTCAAGCCATAGATATTTCGGCAAATCAAATAACTGGCTATATTCCAAGTATCGTCGGAAGCTGCAAAGAAGTAGCATATCTGAATCTTTCTTACAATGCACTTGAAGGTCCAATTCCAGTGTCAATCAGTGAACTTCTAAGTCTTCAAGACCTAGATCTCTCCTCCAACAATTTGTCAGGGGGAATACCCGTATCACTAGCAAATCTCACATTGCTCCACCACTTGAATTTTTCTTTCAACAAAGCTATCAGGAGAAGTCCCTAA___AGGTGGAGACATT

Fln Alignment:

Contig9592___LVGYIPEELASLANLAFYFNLSNNLLSGHVPLELGTFDKLQAIDISANQITGYIPSIVGSCKEVAYLNLSYNALEGPIPV
B8LRW5_________________LTGTLLSSIQQLSTQLSVFDLSHNEIGGKIPPEIGKLANLTYLNLEWNIFNGSIPSTLGRLQKLERLYLGRNKLQGSIPM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain