SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9590

Length: 538 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9590
ATTGCTAATGGGACATCCCTAGGAAACCTTGTAGAAAGTGGTTGGCGTATATCTGAAGAGGAAGTCAAAGATATTACCATAAAGGTACTGGAGATTTTGCAGTATTTGGGAAACTTAAGGCCTCCGGTGATTCACAGGGACATTAAGCCAGAAAACATTATCTGGGATGCAAAAACAAAGACAGTGAATTTGGTTGACTTTGGAGCTGTGCAAGATGCAGTTTCTATGACTATGATTGGAAGTACGGTTGTAGGCACGTATGGATACATGGCCCCAGAGCAGTTTCAAAATCGTGCTACTTTGCAGACTGACTTATATGGCTTAGGTGGTACCATTTTGTATATGCTTTCAGGACGATCTCCTTCATATTTCCCTCAGAAACGTTTGAAAGTAGATTTTAGAGGATTCGTTCCGATGAGCTCACATTTGGCAGTCATTGTTGAGCGACTCCTTGAGCCTGCACCTGAAGATCGCTTCCAGTCTGCAGAGGAGGTCATCAAAGCCCTTAAGTTGGAAGATGGTTCCTCGTATGATGTTG

Ace file of the UniGene biog3_v1.0_unigene9590 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25790	3/4
SustainPine v2.0	sp_v2.0_unigene37747	1/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine/threonine kinase [Nodularia spumigena CCY9414] gb\|EAW46384.1\| serine/threonine kinase [Nodularia spumigena CCY9414]	-	-	2.0e-38	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	serine threonine protein kinase	-	-	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL96

Fln msg: Distance to subject end: 75 aas, your sequence is shorter than subject: 179 - 407

Fln protein: IANGTSLGNLVESGWRISEEEVKDITIKVLEILQYLGNLRPPVIHRDIKPENIIWDAKTKTVNLVDFGAVQDAVSMTMIGSTVVGTYGYMAPEQFQNRATLQTDLYGLGGTILYMLSGRSPSYFPQKRLKVDFRGFVPMSSHLAVIVERLLEPAPEDRFQSAEEVIKALKLEDGSSYDV

Protein Length: 180

Fln nts: ATTGCTAATGGGACATCCCTAGGAAACCTTGTAGAAAGTGGTTGGCGTATATCTGAAGAGGAAGTCAAAGATATTACCATAAAGGTACTGGAGATTTTGCAGTATTTGGGAAACTTAAGGCCTCCGGTGATTCACAGGGACATTAAGCCAGAAAACATTATCTGGGATGCAAAAACAAAGACAGTGAATTTGGTTGACTTTGGAGCTGTGCAAGATGCAGTTTCTATGACTATGATTGGAAGTACGGTTGTAGGCACGTATGGATACATGGCCCCAGAGCAGTTTCAAAATCGTGCTACTTTGCAGACTGACTTATATGGCTTAGGTGGTACCATTTTGTATATGCTTTCAGGACGATCTCCTTCATATTTCCCTCAGAAACGTTTGAAAGTAGATTTTAGAGGATTCGTTCCGATGAGCTCACATTTGGCAGTCATTGTTGAGCGACTCCTTGAGCCTGCACCTGAAGATCGCTTCCAGTCTGCAGAGGAGGTCATCAAAGCCCTTAAGTTGGAAGATGGTTCCTCGTATGATGTTG

Fln Alignment:

Contig9590___ISEEEVKDITIKVLEILQYLGNLRPPVIHRDIKPENIIWDAKTKTVNLVDFGAVQ--DAVSMTMI-------GSTVVGTYGYMAPEQFQNR-ATLQTDLYGLGGTILYMLSGRSP-----SYFPQKRLKV-DFRGFVPMSSHLAVIVERLLEPAPEDRFQSAEEVIKALK
B8LL96_________________ISEDEARFYIAEIVDVLEYLHKLG--LIHRDVKPENILLTADGH-VKLADFGSVKPMENTSISIIPTTSNEKACTFVGTAAYVPPEVLKHAPPTIGNDLWALGCTLYQMLSGISPFKDGSEWLTFQRIMARDFKFPEYFSSEARHLIDCLLDMDPSKRLASGPDGYASLK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
105	33			66	0.997452
109			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain