SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9566

Length: 271 nt

UniGene Fasta

>biog3_v1.0_unigene9566
CCAGCCAAAGAAGAGACAATGTTTGTGTTTGAGAAGATGAAAGACCTTGGGAGTGTTGGTTGGAAGAGGGGGAATGTATGGAAATGTCTTCAGAATCAAGCCTCCAATGTGCTTCACAAAGGAAGATTCTGATTTTCTTGTGGATGTTATGGACTATTCACTGTCAAAACTTTAATTTACTTTTCATAGTTTGGAACAGGTTCGTACTTGTTTCAATAAATTTGCAACTATAAGTGTTGCAATAACATCTGAACTTTTAAGTTATTACATT

Ace file of the UniGene biog3_v1.0_unigene9566

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16880	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Alanine-glyoxylate aminotransferase, putative n=1 Tax=Ricinus communis RepID=B9T1D1_RICCO	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	protein	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine--glyoxylate transaminase.	EC:2.6.1.44	-	0.0	86%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	86%
Blast2go	Glycine, serine and threonine metabolism	00260	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	86%
Blast2go	arginine catabolic process to glutamate	GO:0019544	Biological Process	86%
Blast2go	alanine-glyoxylate transaminase activity	GO:0008453	Molecular Function	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aminotransferase class-III	IPR005814	-	0.0	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW66

Fln msg: your sequence is shorter than subject: 58 - 482

Fln protein: QPKKRQCLCLRR*KTLGVLVGRGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL*

Protein Length: 59

Fln nts: CCAGCCAAAGAAGAGACAATGTTTGTGTTTGAGAAGATGAAAGACCTTGGGAGTGTTGGTTGGAAGAGGGGGAATGTATGGAAATGTCTTCAGAATCAAGCCTCCAATGTGCTTCACAAAGGAAGATTCTGATTTTCTTGTGGATGTTATGGACTATTCACTGTCAAAACTTTAA___TTTACTTTTCATAGTTTGGAACAGGTTCGTACTTGTTTCAATAAATTTGCAACTATAAGTGTTGCAATAACATCTGAACTTTTAAGTTATTACATT

Fln Alignment:

Contig9566___KKRQCLCLRR*KTLGVLVGRGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL
A9NW66_________________REETSLAFERMKDLGVLVGKGGMYGNVFRIKPPMCFTKEDSDFLVDVMDYSLSKL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
18	60			40	1.0
19	60			40	1.0
20		40		60	1.0
21	40		60		1.0
22		40		60	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain