SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9555

Length: 239 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9555
AATGTATTTACGTGCTGAAGTCACTGCATCAGCATGGGTAAATGACTTTAGGGAGCAAATTGAAAGAACGAGGTTTCTTAGTACAGTTTACCGTTCTGCCACAGCACTAGGGTCTCGGTTACCATCACTCGCAAAGGCCAGTAAGGCTAGAGTTGCAAGTGCTGGTGCAATCTGGCGTCCAGTTTCAGACAGTACTCAGGTTGTTATGAAACAAGCACAAACTATGGCACAAGCTGTTG

Ace file of the UniGene biog3_v1.0_unigene9555 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1703	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Triacylglycerol lipase, putative n=1 Tax=Ricinus communis RepID=B9RTA9_RICCO	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	75%
Blast2go	lipase class 3 family protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carboxylesterase.	EC:3.1.1.1	-	0.0	82%

Source	KEGGs	Term	Type	Identity
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960		82%
Blast2go	Drug metabolism - other enzymes	00983		82%
Blast2go	Metabolic pathways	01100		82%
Blast2go	Biosynthesis of secondary metabolites	01110		82%
Blast2go	Triacylglycerol lipase.	EC:3.1.1.3	-	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycerolipid metabolism	00561		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	lipid catabolic process	GO:0016042	Biological Process	82%
Blast2go	carboxylesterase activity	GO:0004091	Molecular Function	82%
Blast2go	triglyceride lipase activity	GO:0004806	Molecular Function	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, class 3	IPR002921	-	0.0	-
Sma3	Mono-/di-acylglycerol lipase, N-terminal	IPR005592	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SI74

Fln msg: Distance to subject end: 243 aas, your sequence is shorter than subject: 79 - 646

Fln protein: MYLRAEVTASAWVNDFREQIERTRFLSTVYRSATALGSRLPSLAKASKARVASAGAIWRPVSDSTQVVMKQAQTMAQAV

Protein Length: 80

Fln nts: AATGTATTTACGTGCTGAAGTCACTGCATCAGCATGGGTAAATGACTTTAGGGAGCAAATTGAAAGAACGAGGTTTCTTAGTACAGTTTACCGTTCTGCCACAGCACTAGGGTCTCGGTTACCATCACTCGCAAAGGCCAGTAAGGCTAGAGTTGCAAGTGCTGGTGCAATCTGGCGTCCAGTTTCAGACAGTACTCAGGTTGTTATGAAACAAGCACAAACTATGGCACAAGCTGTTG

Fln Alignment:

Contig9555___LRAEVTASAWVNDFREQIERTRFLSTVYRSATALGSRLPSLAKASKARVASAGAIWRPVSDSTQVVMKQAQTMAQAV
D8SI74_________________LRAEVTSSAWVSDFKEQIERTRILRTVYRSATAVSSRLPSMAR-MRTGVASAGAIWKPVSSSTQVVMKQAQNVAMAV

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
124	25	75			0.996473
125		25	75		0.996473
127			75	25	0.996473
128	75			25	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain