SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9539

Length: 412 nt

UniGene Fasta

>biog3_v1.0_unigene9539
AAAGGGTGCCTCAGTTCTTAACAAGCATGGGCAATGTGTCTTACACATAGCATCTGCACTAGGTTACGAATGGGCAATAACTCCAATACTAAATGCTGGTGTCGGGATTAACTTTCGAGATGCACATGGATGGACTGCCCTTCATTGGGCTGCATGTTATGGCAGGGAAAAAACTGTGGCGGCACTTATAGCTGCAGGTGCATCAGCAGGAGCAGTCACAGATCCTACCCCAAAATTTCCATCTGGGAGAACTGCAGCAGGCATTGCTGCAGCCAGTGGACATGGTGGGATTGCAGGTTACCTGGCAGAGGCATCACTAACTAGCCACCTATCTACGCTCACTCTTGGTGAGAATGAGATTTCAAAGGCATCTGCAGCAGTGGAGGCAGACAGAGCTGTGGAAAGTGTGTCA

Ace file of the UniGene biog3_v1.0_unigene9539

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25049	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	calmodulin-binding transcription activator 4 [Arabidopsis thaliana] sp\|Q9FYG2.1\|CMTA4_ARATH RecName: Full=Calmodulin-binding transcription activator 4; AltName: Full=Ethylene-induced calmodulin-binding protein 4; Short=AtFIN21; Short=EICBP4; AltName: Full	-	-	36%
FL-Next	Isoform 2 of Calmodulin-binding transcription activator 1 OS=Arabidopsis thaliana GN=CMTA1	-	-	56%
Blast2go	calmodulin-binding transcription activator 4-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	CG-1 DNA-binding domain	IPR005559	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FY74-2

Fln msg: Distance to subject end: 269 aas, your sequence is shorter than subject: 137 - 989

Fln protein: KGASVLNKHGQCVLHIASALGYEWAITPILNAGVGINFRDAHGWTALHWAACYGREKTVAALIAAGASAGAVTDPTPKFPSGRTAAGIAAASGHGGIAGYLAEASLTSHLSTLTLGENEISKASAAVEADRAVESVS

Protein Length: 138

Fln nts: AAAGGGTGCCTCAGTTCTTAACAAGCATGGGCAATGTGTCTTACACATAGCATCTGCACTAGGTTACGAATGGGCAATAACTCCAATACTAAATGCTGGTGTCGGGATTAACTTTCGAGATGCACATGGATGGACTGCCCTTCATTGGGCTGCATGTTATGGCAGGGAAAAAACTGTGGCGGCACTTATAGCTGCAGGTGCATCAGCAGGAGCAGTCACAGATCCTACCCCAAAATTTCCATCTGGGAGAACTGCAGCAGGCATTGCTGCAGCCAGTGGACATGGTGGGATTGCAGGTTACCTGGCAGAGGCATCACTAACTAGCCACCTATCTACGCTCACTCTTGGTGAGAATGAGATTTCAAAGGCATCTGCAGCAGTGGAGGCAGACAGAGCTGTGGAAAGTGTGTCA

Fln Alignment:

Contig9539___KGASVLNKHGQCVLHIASALGYEWAITPILNAGVGINFRDAHGWTALHWAACYGREKTVXXXXXXXXXXXXVTDPTPKFPXXXXXXXXXXXXXXXXXXXYLAEAXXXXXXXXXXXGENEISKASAAVEADRAVESVS
Q9FY74-2_______________KGPNILDEDGQGILHFVAALGYDWAIKPVLAAGVNINFRDANGWSALHWAAFSGREETVAVLVSLGADAGALTDPSPELPLGKTAADLAYANGHRGISGFLAESSLTSYLEKLTVDSKENSPANSC--GEKAVQTVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain