SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9513

Length: 229 nt

UniGene Fasta

>biog3_v1.0_unigene9513
TGCCCGAGGCCGACAAGCTTATGTTCGCCAAGCACAATCTTCTCATTCTGATGAAGGCTCCTCTAGAAGCAAAATGGAAGGCAATAAGCAAAAGTCACTCCATGCTTTTTGTCATGAGATATTAAGGTCATTGTCATTTCATATAAACCATTTGTTTTCGGAACTAGGAAAGGTAATGCATCTACCCTCGCGCCGTCGGGATGATTCTCCTGCTGTCAGTCCTGCTTCC

Ace file of the UniGene biog3_v1.0_unigene9513

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12351	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Contains similarity to ubiquitin carboxyl-terminal hydrolase 14 gb\|Z35927 from S. cerevisiae [Arabidopsis thaliana]	-	-	1.0e-06	24%
FL-Next	tr=E3 ubiquitin protein ligase upl2, putative; Ricinus communis (Castor bean).	-	-	0.0	56%
Blast2go	e3 ubiquitin-protein ligase upl1-like	-	-	5.54776e-37	56%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SMZ3

Fln msg: Distance to subject end: 2599 aas, your sequence is shorter than subject: 76 - 3666

Fln protein: ARGRQAYVRQAQSSHSDEGSSRSKMEGNKQKSLHAFCHEILRSLSFHINHLFSELGKVMHLPSRRRDDSPAVSPAS

Protein Length: 77

Fln nts: TGCCCGAGGCCGACAAGCTTATGTTCGCCAAGCACAATCTTCTCATTCTGATGAAGGCTCCTCTAGAAGCAAAATGGAAGGCAATAAGCAAAAGTCACTCCATGCTTTTTGTCATGAGATATTAAGGTCATTGTCATTTCATATAAACCATTTGTTTTCGGAACTAGGAAAGGTAATGCATCTACCCTCGCGCCGTCGGGATGATTCTCCTGCTGTCAGTCCTGCTTCC

Fln Alignment:

Contig9513___SSHSDEGSSRSKMEGNKQKSLHAFCHEILRSLSFHINHLFSELGKVMHLPSRRRDDSPAVSPAS
B9SMZ3_________________SESSDAAGAISKKEYDRQRSYYTSCCDMVRSLSFHIMHLFQELGKAMLLPSRRRDDTVNVSPSS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
40		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain