SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9512

Length: 1421 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9512

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1543	18/21
SustainPine v2.0	sp_v2.0_unigene10371	3/21

Source	Descriptions	Term	Type	Identity
AutoFact	putative ATP(GTP)-binding protein [Oryza sativa Japonica Group]	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	atp-binding family protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	ATP binding	GO:0005524	Molecular Function	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family, ATP binding	IPR004130	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKZ3

Fln msg:

Fln protein: MGYAQLVIGPAGSGKSTYCYNLQQHCESIGRSVHIVNLDPAAENFKYSVAIDIRELISLEDVMEELNLGPNGGLIYCMEHLEENLEDWLAEQLEDYLDDDYLVFDCPGQIELYSHIPVFRTFVDQLRRWNYNVCAVYLLDSQFVSDIAKYLSGCMASLSAMVQLELPHVNVLTKMDLVTNKKEIEKFLDPDTRLLLADLNMQMAPRFAKLNKALAELLDDYNMVNFLPLDNRKEKSMQYILSHIDNAIQFGEDADVKVKDFDPENEDRQ*

Protein Length: 271

Fln nts: TGCTCATATAACCAGGCCGCACGATCACTCGGCTGTAATTCTGCTTCGCTCGATTGTCCCTCCAAGTTTCTGTTAACTTTCCAAGATGGTAAAGATGTTATTGGCATTGAAAACCACTGTCGGTTCAGCCACTGCTGCGCTTTGTAAACCGTGAGGAGGAAGGCGCGCCCCTGTCCAGAGCCCCGTGGAGCTGTTGCTGGCTTGGAGGGCTGCGCGCTGGAGCAGACTGTCTGAGTCAACTGAAGCCGAGAGCATCCAAAACAAAGAACCGCTGGTTTCAAGAAAGTCGGGTACACATAATTGCAAAGTTCAGTGAGGATAATTTTGCACAAAGCTATATTTAATAGTTATAAATGAAAAGTCTCTTGGGTGACAATGGGGAAAGATTCGTACTGGCATCTGTGGGGTCTCAGTAAATATGAAGCGTTCTAGTATTTTTAGTATATTGTTGGCTGGTCTTGTGTGGTTTGCAGTTTATGGTGCAGTGGCCATTCTTTGTCCAGTTCCTTTCTTCCTTGGTACTTTTTCTTTTGGTCTCTGAAACTGAGAGGAATTTGTAACATCATAACA_-_ATGGGCTATGCACAACTTGTCATTGGGCCTGCGGGCAGTGGTAAGTCAACCTACTGCTACAACTTGCAACAACACTGTGAGAGTATTGGTCGTTCCGTTCATATTGTGAACCTTGATCCAGCTGCAGAGAATTTTAAGTATTCAGTAGCTATCGATATTAGAGAACTTATCTCTTTGGAAGATGTCATGGAGGAGCTGAATCTGGGTCCAAATGGAGGACTTATATATTGTATGGAACACTTGGAGGAGAATTTGGAGGATTGGCTTGCAGAACAATTGGAGGATTATTTAGATGATGACTATCTTGTTTTTGATTGCCCAGGTCAGATAGAGCTTTATTCCCATATACCTGTATTCCGAACATTTGTTGACCAACTCCGGCGTTGGAATTATAATGTTTGTGCTGTGTATTTGCTTGATTCCCAGTTTGTGTCAGATATAGCAAAGTATCTAAGTGGTTGTATGGCATCTCTTTCTGCAATGGTGCAACTTGAACTGCCCCATGTAAATGTTTTGACTAAGATGGATCTTGTTACAAACAAGAAAGAAATCGAGAAGTTTCTTGATCCAGATACAAGATTATTGTTGGCAGATTTGAATATGCAAATGGCCCCACGGTTCGCAAAACTAAACAAAGCATTGGCAGAGCTGCTTGATGACTATAATATGGTCAACTTCCTACCTCTTGATAACAGGAAAGAAAAAAGCATGCAATATATTTTGTCCCATATTGATAATGCCATTCAGTTTGGGGAGGATGCTGATGTCAAGGTTAAGGATTTCGATCCTGAAAATGAAGATAGACAGTGA___GACTTTCTATGGAGATACTGAATGAAAATTTTGCTTACATT

Fln Alignment:

Contig9512___MGYAQLVIGPAGSGKSTYCYNLQQHCESIGRSVHIVNLDPAAENFKYSVAIDIRELISLEDVMEELNLGPNGGLIYCMEHLEENLEDWLAEQLEXXXXXXXXVFDCPGQIELYSHIPVFRTFVDQLRRWNYNVCAVYLLDSQFVSDIAKYLSGCMASLSAMVQLELPHVNVLTKMDLVTNKKEIEKFLDPDTRLLLADLNMQMAPRFAKLNKALAELLDDYNMVNFLPLDNRKEKSMQYILSHIDNAIQFGEDADVKVKDFDPENED
B8LKZ3_________________MGYAQLVIGPAGSGKSTYCYNLQQHCESIGRSVHIVNLDPAAEDFKYSVAIDIRELISLEDVMDELNLGPNGGLIYCMEHLEENLEDWLAEQLEDYLDDDYLVFDCPGQIELYSHIPVFRTFVDQLRRWNYNVCAVYLLDSQFVSDITKYLSGCMASLSAMVQLELPHVNVLTKMDLVTNKKEIEKFLDPDTRLLIADLNEHMAPRFAKLNKALAELLDDYNMVNFLPLDIKKENSMQYILSQIDNAIQFGEDADVKIKDFDPENGD

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
367			33	66	0.997452
399		25	75		0.996473
561		33		66	0.997452
916	16	83			0.994512
1036	16			83	0.994512
1040			83	16	0.994512
1102		20		80	0.995493
1103	20	80			0.995493
1378	33			66	0.997452
1379		33	66		0.997452
1381			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain