SustainPineDB

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Assembly info
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9505

Length: 410 nt

UniGene Fasta

>biog3_v1.0_unigene9505
AATGTAGTACTTTTACAATCGCGTACAAAATGTTATTTCAAAATACACAATAGAGAGACACTGGTATTCGCTCAATGAGGAGGTCGGTGGAATGAATGATGTCCTCTACCGTTTATACACATTATCGAAAAACCAGAAACATTTGGAGCTTGCAGACCGTTGGATAATGGGTGCTAAACATAGGAAACACAAATTCATTTTCTGATTGGATCACATCTGTTCCTCCTGACTTTGCTTCGCAGTTACACACTTTTAGTCAAGAATGGAAGATATCTGGTTCAAATGAATCCAAGAACAACACTGTTGTAATTACATACAACAATGTTTCAAATCAATAATAATGGATTCTTTTCCAGAGGAAGGGACAAATGAGGCAGCGCATGCTACTTTCAGAATTGTAGATACTAATG

Ace file of the UniGene biog3_v1.0_unigene9505

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5687	2/4
SustainPine v2.0	sp_v2.0_unigene40393	2/4

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1680 domain containing protein	-	-	32%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	73%
Blast2go	uncharacterized protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF1680	IPR012878	-	0.0	-
Sma3		IPR017909	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GU96

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 474 aas, your sequence is shorter than subject: 68 - 874

Fln protein: M*YFYNRVQNVISKYTIERHWYSLNEEVGGMNDVLYRLYTLSKNQKHLELADRWIMGAKHRKHKFIF*

Protein Length: 69

Fln nts: AATGTAGTACTTTTACAATCGCGTACAAAATGTTATTTCAAAATACACAATAGAGAGACACTGGTATTCGCTCAATGAGGAGGTCGGTGGAATGAATGATGTCCTCTACCGTTTATACACATTATCGAAAAACCAGAAACATTTGGAGCTTGCAGACCGTTGGATAATGGGTGCTAAACATAGGAAACACAAATTCATTTTCTGATTGGATCACATCTGTTCCTCCTGACTTTGCTTCGCAGTTACACACTTTTAGTCAAGAATGGAAGATATCTGGTTCAAATGAATCCAAGAACAACACTGTTGTAATTACATACAACAATGTTTCAAATCAATAATAATGGATTCTTTTCCAGAGGAAGGGACAAATGAGGCAGCGCATGCTACTTTCAGAATTGTAGATACTAATG

Fln Alignment:

Contig9505___YFYNRVQNVISKYTIERHWYSLNEEVGGMNDVLYRLYTLSKNQKHLELA
F6GU96_________________YFYNRVQNVISSYSIERHWLSLNEETGGMNDFLYNLYRITGDQKHFVLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain