SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9474

Length: 593 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9474 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2944	6/6

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosome-binding factor A, putative n=1 Tax=Ricinus communis RepID=B9RG62_RICCO	-	-	79%
FL-Next	sp=Probable ribosome-binding factor A, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	80%
Blast2go	protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amidophosphoribosyltransferase.	EC:2.4.2.14	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	88%
Blast2go	Alanine, aspartate and glutamate metabolism	00250	88%
Blast2go	Metabolic pathways	01100	88%
Blast2go	Biosynthesis of secondary metabolites	01110	88%

Source	GOs	Term	Type	Identity
Blast2go	purine base biosynthetic process	GO:0009113	Biological Process	88%
Blast2go	rRNA processing	GO:0006364	Biological Process	88%
Blast2go	nucleoside metabolic process	GO:0009116	Biological Process	88%
Blast2go	RNA binding	GO:0003723	Molecular Function	88%
Blast2go	amidophosphoribosyltransferase activity	GO:0004044	Molecular Function	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	0.0	-
Sma3	K homology domain-like, alpha/beta	IPR015946	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
18	66		33		0.997452
19		33		66	0.997452
20		33	66		0.997452
349	25		75		0.996473
350	25		75		0.996473
352		75	25		0.996473
353		75		25	0.996473
519	33	66			0.997452
520		33	66		0.997452
523			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain