SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9472

Length: 1147 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9472

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16374	29/35
SustainPine v2.0	sp_v2.0_unigene60894	6/35

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=1 Tax=Pinus pinaster RepID=F4MKL8_PINPS	-	-	90%
FL-Next	sp=Malate dehydrogenase; Pinus pinaster (Maritime pine).	-	-	99%
Blast2go	mitochondrial malate dehydrogenase	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	0.0	88%
Blast2go	oxidoreductase activity, acting on CH-OH group of donors	GO:0016614	Molecular Function	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	L-lactate/malate dehydrogenase	IPR001557	-	-
Sma3	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	-
Sma3	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	-
Sma3	Malate dehydrogenase, active site	IPR001252	-	-
Sma3	Malate dehydrogenase, type 1	IPR010097	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL8

Fln msg: atg_distance in limit (1-15): atg_distance = 15, W2: There is no M at the beginning,

Fln protein: NVSSSSFKTNVMPRRFYSSGGSPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENANVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAGVPVEEVDVPVVGGHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKVRLGEKGVEEVLGLGFLSEYEKQGLEGLKSELKSSIEKGIKFASEN*

Protein Length: 342

Fln nts: A_-_ATGTATCATCTTCTTCTTTCAAAACTAATGTTATGCCGAGAAGGTTTTATTCGAGTGGTGGAAGTCCTCCGCCACGCAAGGTTGTTGTGTTGGGAGCTGCTGGGGGTATCGGGCAGCCATTGGCTCTTCTGATGAAACTCAATCCTCTGGTGTCAAAGTTGGCGCTCTATGATATCGCTGGCACTCCAGGTGTGGCTGCCGATGTCGGCCACATCAACAGCCGTGCTGAGGTTGCAGGATATATGGGAGAGGAACAACTTGGCACGGCATTGGAGAATGCAAATGTTGTGATCATTCCTGCTGGTGTGCCTCGAAAACCTGGCATGACCCGTGATGATCTTTTCAACATCAATGCAGGGATTGTTAAATCTCTTTGCTCTGCAATTGCAAAATACTGCCCAGAGGCAATTGTAAATATGATCAGCAATCCTGTAAATTCTACTGTACCAATAGCTGCTGAGGTTTTTAAGAAGGCAGGGACCTATAATGAAAAGAAACTCTTTGGTGTTACTACTCTTGATGTTGTCCGCGCAAAGACGTTCTATGCTTCAAAAGCAGGAGTTCCTGTTGAAGAAGTTGATGTTCCTGTTGTAGGTGGACATGCGGGTGTTACAATTCTTCCACTTTTTTCACAGGCAACACCAAAGCCAAACTCTGTATTGTCTGAGGAGGACATTAAAGCCTTGACAAAGCGCACACAGGATGGAGGAACTGAAGTTGTTGAAGCAAAAGCAGGGAAAGGTTCAGCCACACTGTCTATGGCTTATGCTGGAGCTGTTTTTGCTAGCTCTGTTCTAAAAGGTCTGAATGGGGAACCAAACATTGTGGAGTGCTCTTATGTCCAATCTAATGTTACTGAATTGCCTTTCTTTGCCTCTAAGGTAAGACTGGGTGAAAAAGGTGTTGAAGAAGTATTGGGTTTGGGTTTCCTTTCCGAGTATGAGAAACAGGGGCTAGAAGGACTGAAATCAGAGCTGAAGTCTTCCATTGAGAAGGGCATTAAGTTCGCGAGTGAGAACTGAGGTTGCCCTTTTTTTGGTACTAATCAAGTTTTGTTTGTTACGTTGAGAGTAGCTGGGATGTGTCCAGCAATTTTTATCTTCTCATTTATTTAAGCACCCTGGGTCATTTGAAGAGGATGCAAAA

Fln Alignment:

Contig9472___NVSSSSFKTNVMPRRFYSSGGSPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENANVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAXXXXXXXXXXXXXXHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKXXXXXXXXXXXXXXXXXXXYEKQGLEGLKSELKSSIEKGIKFASEN
F4MKL8_________________NASSSSFKTNVMPRRFYSSGGSPPPRKVVVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHINSRAEVAGYMGEEQLGTALENANVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCSAIAKYCPEAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYASKAGVPVEEVDVPVVGGHAGVTILPLFSQATPKPNSVLSEEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFASSVLKGLNGEPNIVECSYVQSNVTELPFFASKVRLGEKGVEEVLGLGFLSEYEKQGLEGLKSELKSSIEKGIKSASEN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
963			87	12	0.992554
965	87			12	0.992554
995		12	87		0.992554
997	87			12	0.992554
998			87	12	0.992554

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain