SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9471

Length: 977 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9471

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9467	3/12
SustainPine v2.0	sp_v2.0_unigene16973	9/12

Source	Descriptions	Term	Type	Identity
AutoFact	Malic enzyme n=1 Tax=Ricinus communis RepID=B9RKI6_RICCO	-	-	76%
FL-Next	sp=Malic enzyme; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	nadp-dependent malic enzyme	-	-	89%

Source	InterPros	Term	Type	Identity
Sma3	Malic enzyme, conserved site	IPR015884	-	-
Sma3	Malic enzyme, N-terminal	IPR012301	-	-
Sma3	Malic enzyme, NAD-binding	IPR012302	-	-
Sma3	Malic oxidoreductase	IPR001891	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRQ8

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 325 - 581

Fln protein: MYERLFYKLLVDNVEELLPIVYTPTVGESCQKYGSIFRRPQGLYISLKEKGKILEVLKNWSERSVNVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNENLLNDEFNIGLRQKRTTGQEYYDFLHEFMCAVKQNYGEKVLIQFEDFANHNAFELLAKYRKTHLVFNDDIQGTAAVVLAGLIASLKATGGTLADHTFLFLGAGEAGTGIAELIALEMTKQSNMTLEEAREKIWMVDSKGLIVKSRMESLQQFKRPWAHEHEPCKDLLDAVKAIKPTILIGSSGVGKTFTKEVIEAITSYCEKPVH

Protein Length: 326

Fln nts: AATGTATGAAAGGTTGTTTTATAAACTCTTGGTGGATAATGTGGAAGAGTTGCTTCCCATTGTTTACACTCCAACTGTTGGCGAATCCTGTCAAAAATATGGGTCAATCTTCAGGCGTCCACAGGGTCTTTACATTAGCTTGAAAGAGAAAGGTAAGATCCTAGAAGTTTTGAAGAACTGGAGTGAAAGGAGTGTTAATGTTATAGTTGTCACTGATGGTGAACGCATTCTGGGACTTGGCGATCTTGGATGTCAGGGTATGGGCATACCTGTAGGGAAATTATCTCTATACACTGCACTTGGTGGAGTTCGTCCTTCATCGTGTCTTCCAATAACAATTGATGTTGGGACCAACAATGAAAATCTCTTAAATGATGAATTTAATATTGGTCTCCGACAAAAGCGCACTACTGGCCAGGAATATTATGACTTCCTTCATGAGTTCATGTGTGCAGTCAAACAAAATTATGGAGAGAAAGTTCTTATCCAGTTTGAAGACTTTGCCAATCACAATGCCTTTGAGTTGCTGGCAAAATACCGGAAAACCCATCTAGTCTTCAATGATGACATTCAGGGGACAGCTGCAGTGGTTCTGGCAGGGTTGATTGCATCATTAAAGGCAACTGGTGGAACATTGGCTGATCATACCTTCCTCTTCCTAGGAGCCGGAGAGGCAGGAACAGGTATTGCAGAGCTTATAGCACTCGAAATGACGAAACAGAGTAATATGACACTGGAAGAGGCTCGCGAGAAGATATGGATGGTTGACTCCAAGGGACTCATAGTAAAGTCAAGAATGGAATCTCTTCAACAATTCAAAAGGCCTTGGGCACATGAGCATGAACCCTGCAAAGATCTTTTGGATGCTGTGAAGGCAATCAAACCGACAATATTGATTGGGTCATCAGGAGTTGGAAAAACTTTCACAAAAGAAGTAATTGAGGCTATTACATCTTACTGTGAGAAACCTGTACATT

Fln Alignment:

Contig9471___ERLFYKLLVDNVEELLPIVYTPTVGESCQKYGSIFRRPQGLYISLKEKGKILEVLKNWSERSVNVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNENLLNDEFNIGLRQKRTTGQEYYDFLHEFMCAVKQNYGEKVLIQFEDFANHNAFELLAKYRKTHLVFNDDIQGTAAVVLAGLIASLKATGGTLADHTFLFLGAGEAGTGIAELIALEMTKQSNMTLEEAREKIWMVDSKGLIVKSRMESLQQFKRPWAHEHEPCKDLLDAVKAIKPTILIGSSGVGKTFTKEVIEAITSYCEKPV
B8LRQ8_________________ERLFYKLMIDHVEELLPIVYTPTVGEACQKYGTIFRRPQGLYISLKEKGKVYDVLRNWPEKNIKVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSECLPITIDVGTNNEKLLNDEFYIGLRQKRATGQEYDDLLNEFMYAAKKAYGEKVLIQFEDFANHNAFNLLAKYRSTHLVFNDDIQGTASVVLSGLVASLKLTGGTLADHTFLFLGAGEAGTGIAELIALEMTKQGKISLNEARKRIWLVDSKGLIVKSRMESLQHFKKPWAHEHEPCKGLLDAVKSIRPTILIGSSGVGRTFTKEVIETVSSFNEKPV

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
119	25			75	0.996473
120	25	75			0.996473
121		75		25	0.996473
122	75		25		0.996473
123		75		25	0.996473
748	25			75	0.996473
750	16		83		0.994512
751		83		16	0.994512
752			83	16	0.994512
790	50		50		1.0
806	25			75	0.996473
808	25	25		50	0.995533
809		75		25	0.996473
825	33		66		0.997452
826	33		66		0.997452
827	33	66			0.997452
829	33			66	0.997452
841	33		66		0.997452
848		66	33		0.997452
859		33		66	0.997452
862		33		66	0.997452
871		33		66	0.997452
887	66		33		0.997452
891	33		66		0.997452
894	66		33		0.997452
905	33		66		0.997452
911		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain