SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9469

Length: 1798 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9469 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14578	34/36
SustainPine v2.0	sp_v2.0_unigene78672	1/36

Source	Descriptions	Term	Type	Identity
AutoFact	DNA helicase, TBP-interacting protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TL22_PHYPA	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	dna tbp-interacting protein	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	0.0	93%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	93%
Blast2go	Thiamine metabolism	00730	93%
Blast2go	Metabolic pathways	01100	93%

Source	GOs	Term	Type	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	93%
Blast2go	nucleolus	GO:0005730	Cellular Component	93%
Blast2go	chloroplast	GO:0009507	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	TIP49, C-terminal	IPR010339	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ05

Fln msg: Overlapping hits, possible frame ERROR between 256 and 247, and overlapping frame ERROR between 351 and 348,

Fln protein: MAELKLSETRDLTRIERIGAHSHIRGLGLDDALEARKVSQGMVGQTSARKAAGVILEMIKEGKIAGRAVxxxxxPGTGKTAIAMGMAKSLGEETPFAMMAGSxxxxLDMSKTEALTQAFRKAIGVIIKEETEIIEGEVVEIQIDRPATSGAAAKTGKLTLKTTEMETVYDLGSKMIEGLSKEKVQSGDVIAIDKASGKITKLGRSFARSRDYDAMGPQTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDSKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPILVVATNRGITKIRGTNYKSPHGIPIDLLDRLLIISTQPYMEDEMRQILDIRCEEEDVEMSDDAKELLTKIAVETSLRYAIHLITAAALACQKRKGKFVELEDVSRVYQLFVDIKRSTQFLMEYQEQFMFNEVPGEIEEDNMVV*

Protein Length: 465

Fln nts: AATGTCAGGTTTCAAACGGTGATTATCTGTAAGAGCC_-_ATGGCGGAGCTAAAGCTATCGGAGACCAGGGATTTAACGCGCATAGAGCGAATAGGCGCCCACTCACACATCAGAGGCTTAGGCTTGGATGATGCATTAGAAGCCCGAAAGGTTTCACAGGGTATGGTAGGACAGACATCCGCTAGAAAAGCTGCAGGGGTGATTCTGGAAATGATTAAGGAAGGGAAAATAGCAGGCCGCGCAGTTxxxxxxxxxxxxxxxCCGGGAACAGGAAAAACTGCCATAGCCATGGGTATGGCTAAATCCCTAGGCGAAGAAACCCCCTTTGCAATGATGGCAGGCAGTGAxxxxxxxxxATTAGACATGAGCAAGACCGAGGCTTTGACACAGGCTTTCAGGAAGGCAATAGGGGTTATAATTAAGGAAGAGACTGAAATCATCGAAGGCGAAGTTGTTGAGATACAGATAGATCGGCCCGCTACTTCGGGCGCTGCGGCAAAGACTGGGAAATTGACATTGAAGACGACAGAGATGGAGACTGTGTATGATTTGGGGAGCAAGATGATCGAAGGTTTGAGCAAGGAGAAGGTCCAGAGTGGGGATGTGATTGCGATCGATAAAGCTTCTGGGAAGATTACAAAGTTGGGGCGGTCTTTTGCGAGGTCCAGGGATTATGATGCAATGGGGCCGCAGACCAAGTTCGTACAGTGCCCGGATGGAGAGCTGCAGAAACGCAAAGAAGTGGTGCATTGCGTTACGCTGCATGAGATCGATGTCATCAATAGCAGGACGCAAGGGTTTCTGGCCCTCTTTACAGGAGATACTGGAGAGATCCGTTCTGAAGTGAGGGAACAGATTGACAGTAAAGTTGCTGAATGGAGGGAAGAAGGCAAAGCTGAAATTGTACCAGGTGTGCTTTTTATTGACGAAGTCCATATGCTTGACATTGAATGCTTCTCATTTTTGAATCGTGCTCTAGAGAATGAGATGGCACCGATATTGGTTGTTGCAACAAATCGTGGCATTACAAAAATCCGTGGAACAAATTACAAGTCCCCACATGGTATACCCATTGATCTATTAGACCGCCTGCTCATTATTTCGACACAGCCATACATGGAAGATGAGATGCGTCAAATTCTTGATATAAGATGTGAAGAAGAAGATGTTGAAATGTCGGATGATGCAAAGGAACTGCTAACAAAGATAGCAGTTGAGACATCATTGCGCTATGCCATTCACTTAATCACAGCAGCTGCACTAGCCTGCCAGAAGAGAAAGGGGAAATTTGTTGAGCTTGAGGATGTTAGCAGGGTTTACCAATTATTTGTGGATATTAAGAGGTCAACTCAATTCCTTATGGAATATCAGGAGCAATTCATGTTTAATGAGGTCCCTGGTGAGATTGAAGAAGACAATATGGTTGTATAA___TTGTTTTTGCAGAACTTCTATATTTCCCAACAAAGACTATAATTCTGTATTTGGGACTCACAGCAGAAACATCAGCTAAATAACGGAGAGTACAAGATCTGGTGTTTTACTGATACTACTTGCAATATTTTAGCTAGGTATTGCATTTTTTTGGTACTGGATAGTGCTTCAATTGGTTTGCTTGACCAAATTTTTGCACATAAATCTATATTGCAGTAAATGCCACTTCAGGTGCTGTAAATGCCTGGTTTGACAAAAGTTGCTGGCAATTAATGGTATTTTTAGTCTCTATAGAAATCAGCAACTGCTTTAGGCTTGTACTTGCATGACACCTGGTTTATTCTGGCTGACACAACTATAACCTCTACATT

Fln Alignment:

Contig9469___MAELKLSETRDLTRIERIGAHSHIRGLGLDDALEARKVSQGMVGQTSARKAAGVILEMIKEGKIAGRAVLxxxQPGTGKTAIAMGMAKSLGEETPFAMMAGSEIxSLDMSKTEALTQAFRKAXXXXXXXXXXXXXXXXXXIQIDRPATSXXXXXXXXXXXXXTEMETVYDLGSKMIEGLSKEKVQSGDVIAIDKASGKITKLGRSFARSRDYDAMGPQTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDSKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENEMAPILVVATNRGITKIRGTNYKSPHGXXXXXXXXXXXISTQPYMEDEMRQILDIRCEEEDVEMSDDAKELLTKIAVETSLRYAIHLITAAALACQKRKGKFVELEDVSRVYQLFVDIKRSTQFLMEYQEQFMFNEVPGEIEEDNMV
B8LQ05_________________MAELKLSETRDLTRIERIGAHSHIRGLGLDDALEARKVSQGMVGQTSARKAAGVILEMIKEGKIAGRAVLxxxQPGTGKTAIAMGMAKSLGEETPFAMMAGSEIxSLDMSKTEALTQAFRKAIGVRIKEETEIIEGEVVEIQIDRPATSGAAAKTGKLTLKTTEMETVYDLGSKMIEGLSKEKVQSGDVIAIDKASGKITKLGRSFARSRDYDAMGPQTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDSKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVVATNRGITKIRGTNYKSPHGIPIDLLDRLLIISTQPYTEDEMRQILDIRCEEEDVGMSDEAKELLTKIGFETSLRYAIHLITAAALACQKRKGKLVEIVDVSRAYQLFVDIKRSTQFLIEYQEQFMFNEVPGEIEEDTMV

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
258	25		75		0.996473
260	75		25		0.996473
473	75		25		1.0
536	11	88			0.923564
555	18		81		0.999994
642		10		90	0.90298
643	10	90			0.90298
646	10	90			0.90298
647	10			90	0.90298
649		90	10		0.90298
697	12		87		0.992554
699	12			87	0.992554
700			87	12	0.992554
703	14			85	0.993533
708	83			16	0.994512
713		20	80		0.995493
715			80	20	0.995493
716		80		20	0.995493
738	20		80		0.995493
739	20		80		0.995493
741	80		20		0.995493
813	16		83		0.994512
814	16		83		0.994512
920	16			83	0.994512
921		16		83	0.994512
922	16	83			0.994512
1015	11		88		0.923564
1017	11		88		0.923564
1019		88		11	0.923564
1159	16		83		0.994512
1161	16	83			0.994512
1162		83		16	0.994512
1163		83		16	0.994512
1168	20			80	0.995493
1169		20		80	0.995493
1170	20		80		0.995493
1172	80			20	0.995493
1202	25	75			0.996473
1204		75		25	0.996473
1205	83		16		0.994512
1206	16			83	0.994512
1207		83		16	0.994512
1208		83	16		0.994512
1209		83		16	0.994512
1366	20			80	0.995493
1371			80	20	0.995493
1393	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain