SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9442

Length: 270 nt

UniGene Fasta

>biog3_v1.0_unigene9442
TTTGCTAGATTCTATGGATCTGGGGCTGGGTGTGACAGGCGACATGGCGTCGGTGGATCCAGAATTGTTACAGCTGCAGGATGTCCCTATGCTGTCATTGAAGCCTAATCCTTACAAGGCGCATATTGACGAGCTCTTCTCCCAATGGCTTTCGCTTCCAGAGACAGCAAAAATGGTAACAACATTACTTGAAGAAGCAAAAGCAGGTAGTCCTTTGAGTGTTCCAGGGAGTTCGTACAATGCAAATACAAGCACGAGTAATTCTACATT

Ace file of the UniGene biog3_v1.0_unigene9442

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6087	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative protein phosphatase 2A regulatory subunit [Oryza sativa Japonica Group]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	calcium ion binding	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS08

Fln msg: Distance to subject end: 460 aas, your sequence is shorter than subject: 85 - 546

Fln protein: MDLGLGVTGDMASVDPELLQLQDVPMLSLKPNPYKAHIDELFSQWLSLPETAKMVTTLLEEAKAGSPLSVPGSSYNANTSTSNST

Protein Length: 86

Fln nts: TTTGCTAGATTCT_-_ATGGATCTGGGGCTGGGTGTGACAGGCGACATGGCGTCGGTGGATCCAGAATTGTTACAGCTGCAGGATGTCCCTATGCTGTCATTGAAGCCTAATCCTTACAAGGCGCATATTGACGAGCTCTTCTCCCAATGGCTTTCGCTTCCAGAGACAGCAAAAATGGTAACAACATTACTTGAAGAAGCAAAAGCAGGTAGTCCTTTGAGTGTTCCAGGGAGTTCGTACAATGCAAATACAAGCACGAGTAATTCTACATT

Fln Alignment:

Contig9442___MDLGLGVTGDMASVDPELLQLQDVPMLSLKPNPYKAHIDELFSQWLSLPETAKMVTTLLEEAKAGSPLSVPG
B8LS08_________________MDLGLGVTGDMASVDPELLQLQDVPLLSLKPNPYKAHIDELFSQWLSLPETAKMVTTLLEEAKAGSPLSVPG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain