SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9434

Length: 248 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9434
GGGAATAGGCCTGTTGGAAATATAAGCTTAAGGGATGTCCAATTTCTTCTTATGGCCCCTGAGATATATAAAGACTCTAGGTCTGTCACTGCAAAGGATTTTTTGACTGCAGTTAGAACTCACTTGCACATAAAGCAAGATTCATCATCCATTTTAGGTGGTGTTATTGCATACCAAAAGAATGACACTATTGAAGACATCATACTGAAGTTGGATAACACAAAGATACAAAGAATCTATGTTGTTAA

Ace file of the UniGene biog3_v1.0_unigene9434 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26704	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	AMP-activated protein kinase, gamma regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9RAG9_RICCO	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	snf1-related protein kinase regulatory subunit gamma-1-like	-	-	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	0.0	-
Sma3	Cystathionine beta-synthase, core	IPR000644	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A9R1

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 82 - 439

Fln protein: GNRPVGNISLRDVQFLLMAPEIYKDSRSVTAKDFLTAVRTHLHIKQDSSSILGGVIAYQKNDTIEDIILKLDNTKIQRIYVV

Protein Length: 83

Fln nts: GGGAATAGGCCTGTTGGAAATATAAGCTTAAGGGATGTCCAATTTCTTCTTATGGCCCCTGAGATATATAAAGACTCTAGGTCTGTCACTGCAAAGGATTTTTTGACTGCAGTTAGAACTCACTTGCACATAAAGCAAGATTCATCATCCATTTTAGGTGGTGTTATTGCATACCAAAAGAATGACACTATTGAAGACATCATACTGAAGTTGGATAACACAAAGATACAAAGAATCTATGTTGTTAA

Fln Alignment:

Contig9434___NRPVGNISLRDVQFLLMAPEIYKDSRSVTAKDFLTAVRTHLHIKQDSSSILGGVIAYQKNDTIEDIILKLDNTKIQRIYVV
D5A9R1_________________NKIIGNISMRDIRFLLLNRELFPKFRQLTVLDFLRT------IVSTGSSVMMPPVTCKYDTRLADLIEVLAEKCIHRIYLV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
73	33			66	0.997452
74	33		66		0.997452
75			66	33	0.997452
76		33	33	33	0.997753
78	66			33	0.997452
85	66		33		0.997452
244		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain