SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9414

Length: 1006 nt

UniGene Fasta

Ace file of the UniGene biog3_v1.0_unigene9414

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5423	24/25

Source	Descriptions	Term	Type	Identity
AutoFact	RING-H2 finger protein RHG1a-like n=1 Tax=Oryza sativa Japonica Group RepID=Q5N7R4_ORYSJ	-	-	35%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	45%
Blast2go	protein binding protein	-	-	65%

Source	GOs	Term	Type	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	65%
Blast2go	catalytic activity	GO:0003824	Molecular Function	65%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	65%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D8T746

Fln msg: Unexpected stop codon in the beginning of your sequence, query STOP codon too far from subject stop. Distance to subject end: 51 aas, putative chimeric sequence, your sequence is shorter than subject: 254 - 510

Fln protein: ICKLLWEKF*K*SSVDFTFNL*SVLYPPSRNQTTPIVDPDMWCSRSLSLMTEATSFDCVVPSGKVHACGRNYTAPDSIENANRVAGTHLNRNSREHSCTTKRGEKPEKFSDVLLDLGSESGCPVAEVSSIARSHQLQRLRHSSRGGLGEILSVLERSEGRDELSYEQLLMLEATFLLGGIDIYDQHRDLRLDVDSMSYEDLLELGDRIGYVNTGLSEDAIFHCLQKIKHCIMEARSTCLTENACPVCKASVLS*

Protein Length: 255

Fln nts: ATTTGCAAATTACTCTGGGAAAAGTTTTGAAAGTAGAGCTCAGTTGACTTCACGTTCAATCTGTAATCAGTCCTCTATCCCCCATCAAGAAACCAGACGACTCCTATTGTGGATCCTGACATGTGGTGCTCTAGAAGTCTATCTTTGATGACAGAGGCAACTTCGTTTGATTGTGTTGTACCCAGTGGCAAAGTGCATGCTTGTGGTCGTAACTATACAGCACCAGATTCAATTGAAAATGCCAACAGAGTAGCAGGAACTCATTTGAATAGAAATTCCAGAGAGCATTCCTGTACGACAAAGCGTGGAGAAAAGCCAGAAAAATTCTCTGACGTACTATTGGATTTGGGTTCTGAAAGTGGTTGCCCTGTTGCAGAGGTGTCATCCATTGCCAGGAGTCACCAATTACAGAGATTGAGGCATTCATCACGAGGGGGCCTAGGAGAGATACTTTCTGTACTGGAGCGATCTGAGGGACGTGATGAATTGAGTTATGAGCAACTTCTGATGCTGGAAGCCACATTCCTATTGGGTGGAATAGACATTTACGACCAACACAGGGATTTGCGACTTGACGTAGACAGCATGTCCTATGAGGACTTGCTTGAACTTGGAGATCGAATTGGTTACGTCAATACAGGTTTAAGTGAAGACGCTATTTTTCATTGCCTACAAAAGATCAAGCATTGCATCATGGAAGCTAGATCTACTTGTCTAACAGAAAATGCATGCCCTGTTTGTAAGGCATCTGTGTTGTCCTAG___CAAAGTCATTTTGATAAATTCTCTTTTGGTTTGTTGGTCGTGGTATTTTAGCATTTGAAGAGCATATTGTATAGGTTAACATGAGATGCATTTTATTTTTAGATATTCATTCGCCATTGTTTGGTGTTATTCCATTTATATCATGAACAGAGTGATTGGAATGGTAAGAAAGCTCTATGTGTTTGAGGACAACTCATGAGTACGTTTGACTAAATGTAAGAATTTTTGGTGGGTATTTTCTTTT

Fln Alignment:

Contig9414___EKPEKFSDVLLDLGSESGCPVAEVSSIARSHQLQRLRHSSR---GGLGEILSVLERSEGRDELSYEQLLMLEAT-FLLGGIDIYDQHRDLRLDVDSMSYEDLLELGDRIGYVNTGLSEDAIFHCLQKIKHCIMEARSTCLTENACPVCK
D8T746_________________EGSQTFRHPALAVGRRELSALSEGFMAIPSQELEWDHHRPRLMAGGLAEILQALERVERDEDLTREQLIMLEATTFLFGGIGLHDDHSDWRLDIDNMSYEELLALGDRIGTVSTGLSEDTIVQQLKRTKYAAALARSSEDSDVKCCVCQ

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
332	33		66		0.997452
334		66		33	0.997452
417		42		57	1.0
418	42		57		1.0
492		16	83		0.994512
523	50			50	1.0
581		10	90		0.90298
583		90		10	0.90298
584	90			10	0.90298
698			80	20	0.995493
718	25			75	0.996473
719	75	25			0.996473
721		75		25	0.996473
722	75			25	0.996473
827	25	75			0.996473
830	75		25		0.996473
935	75			25	0.996473
981	33		66		0.997452
982		33		66	0.997452
984	66			33	0.997452
985			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain