SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9383

Length: 247 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog3_v1.0_unigene9383
AATGTAAGTATGGGTGCTCACATTTCTTCTGGATTCAAGAGGATTGCAGGAATTGAACTCAATATCAACCATTTAAAGGCGGCATCTTTAGGAATGAATGTCTATGCATCTGCAAAGCCTATTTCTGTAGGTAAAACAATTCAGGTATGGGAAGTGAAATTCTGGAACATCCCTGCATCAGATGTTTCCCGGCGAATAGATCCTTCTGCTTTACCCAAGAATTCTATTCAAACTGTTTCAAGAGTGA

Ace file of the UniGene biog3_v1.0_unigene9383 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4685	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	thioesterase-like protein [Arabidopsis thaliana] gb\|AAD49765.1\|AC007932_13 F11A17.13 [Arabidopsis thaliana] gb\|AAQ22654.1\| At1g48320 [Arabidopsis thaliana] dbj\|BAF01394.1\| F11A17.13 [Arabidopsis thaliana] gb\|AEE32274.1\| thioesterase-like protein [Arabidop	-	-	5.0e-35	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	thioesterase family protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	68%
Blast2go	peroxisome	GO:0005777	Cellular Component	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Phenylacetic acid degradation-related domain	IPR003736	-	-
Sma3	Thioesterase superfamily	IPR006683	-	-
Sma3	TonB box, conserved site	IPR010916	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NTZ2

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 82 - 158

Fln protein: NVSMGAHISSGFKRIAGIELNINHLKAASLGMNVYASAKPISVGKTIQVWEVKFWNIPASDVSRRIDPSALPKNSIQTVSRV

Protein Length: 83

Fln nts: AATGTAAGTATGGGTGCTCACATTTCTTCTGGATTCAAGAGGATTGCAGGAATTGAACTCAATATCAACCATTTAAAGGCGGCATCTTTAGGAATGAATGTCTATGCATCTGCAAAGCCTATTTCTGTAGGTAAAACAATTCAGGTATGGGAAGTGAAATTCTGGAACATCCCTGCATCAGATGTTTCCCGGCGAATAGATCCTTCTGCTTTACCCAAGAATTCTATTCAAACTGTTTCAAGAGTGA

Fln Alignment:

Contig9383___SMGAHISSGFKRIAGIELNINHLKAASLGMNVYASAKPISVGKTIQVWEVKFWNIPASDVSRRIDPSALPKNSIQTVSRV
A9NTZ2_________________SMGAHIASGFQRIAGIELNINHLRAAALGEHVYAQAKPITVGRRVQVWEVKLWKISASLFSSQIDPSNLPEKSLMAVSRV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
139		25	75		0.996473
142			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain