SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9371

Length: 576 nt

UniGene Fasta

>biog3_v1.0_unigene9371
AATGTCCAACTCGTCCTTCTGCACACAAGGGATTCAAAGTAACCAGACAGAGTACGTTAAAATTCTTGGCAAGCTGGCATGCTGTAACTGCACAGACACATTTGTCTGGGAAGTTTATGTCCAGGGAACAGAGTCTCGGTATTCAGTTAGCACAGCTGGGTCGAGCTGCTTCTGCTGCGGGAGCAGCTCGCCGTCTGGCTTCAGTAAAGAAAAATGTAGAAATAGATTCAATTGGAGCCTGCAAACCTGGCAAACAAGAATCTCAAAATGGAGCAATCAAAAAGTACTTCCGTGTTGAGTTTTCTGAAAATGAATATGGAGAAACAGATGACGATCTTGACTTTGGAGCTTTGGAAGAAGGATTTGTAACTGTAACCCCATTAGGATTAACTTCTAACGTTAATGTGGAGACACTCACTTCTACAGCTTCCTGGATTGCCACCGTATTTGGTCGTGATTCATCAGAAAGCCTTTGATTGGATTGGAGTATATTTAAACTCGTGGTAATATGGAGTGAGATTATGGTTTGTCTGATGCCAAGACTTGAGTTTGTGTGGATATCCTCGACATTATTTT

Ace file of the UniGene biog3_v1.0_unigene9371

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3957	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Acid phosphatase n=1 Tax=Cucumis melo subsp. melo RepID=E5GB93_CUCME	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	survival phosphatase nucleotidase	-	-	67%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	67%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	67%
Blast2go	Riboflavin metabolism	00740		0.0	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	0.0	67%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Survival protein SurE-like phosphatase/nucleotidase	IPR002828	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK94

Fln msg: your sequence is shorter than subject: 158 - 394

Fln protein: CPTRPSAHKGFKVTRQSTLKFLASWHAVTAQTHLSGKFMSREQSLGIQLAQLGRAASAAGAARRLASVKKNVEIDSIGACKPGKQESQNGAIKKYFRVEFSENEYGETDDDLDFGALEEGFVTVTPLGLTSNVNVETLTSTASWIATVFGRDSSESL*

Protein Length: 159

Fln nts: AATGTCCAACTCGTCCTTCTGCACACAAGGGATTCAAAGTAACCAGACAGAGTACGTTAAAATTCTTGGCAAGCTGGCATGCTGTAACTGCACAGACACATTTGTCTGGGAAGTTTATGTCCAGGGAACAGAGTCTCGGTATTCAGTTAGCACAGCTGGGTCGAGCTGCTTCTGCTGCGGGAGCAGCTCGCCGTCTGGCTTCAGTAAAGAAAAATGTAGAAATAGATTCAATTGGAGCCTGCAAACCTGGCAAACAAGAATCTCAAAATGGAGCAATCAAAAAGTACTTCCGTGTTGAGTTTTCTGAAAATGAATATGGAGAAACAGATGACGATCTTGACTTTGGAGCTTTGGAAGAAGGATTTGTAACTGTAACCCCATTAGGATTAACTTCTAACGTTAATGTGGAGACACTCACTTCTACAGCTTCCTGGATTGCCACCGTATTTGGTCGTGATTCATCAGAAAGCCTTTGA___TTGGATTGGAGTATATTTAAACTCGTGGTAATATGGAGTGAGATTATGGTTTGTCTGATGCCAAGACTTGAGTTTGTGTGGATATCCTCGACATTATTTT

Fln Alignment:

Contig9371___PTRPSAHKGFKVTRQSTLKFLASWHAVTAQTHLSGKFMSREQSLGIXXXXXXXXXXXXXXXXXXXXVKKNVEIDSIGACKPGKQESQNGAIKKYFRVEFSENEYGETDDDLDFGALEEGFVTVTPLGLTSNVNVETLTSTASWIATVFGRDSSESL
B8LK94_________________PTRPSANKGFKLTGQSTLRLTSNWQPVTLHRHLAGQYMSKEQSLGIQLAQLSQAASAAGAARRLNLRRKNIEVESVG--EAGKQETQSVAVKKYFRVEFSEHEHGEMDDDLDYGALEQGFVTITPLGLTCNAQLDTCTSVATWITTAIDQDAPASL

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
367		33		66	0.997452
368	33		66		0.997452
370	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain