SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9361

Length: 705 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9361 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3010	15/15

Source	Descriptions	Term	Type	Identity
AutoFact	beta-ureidopropionase [Arabidopsis thaliana] gb\|AAO33358.1\|AF465754_1 N-carbamyl-beta-alanine amidohydrolase [Arabidopsis thaliana] gb\|AAN17428.1\| beta-ureidopropionase [Arabidopsis thaliana] gb\|AAP37862.1\| At5g64370 [Arabidopsis thaliana] gb\|AED97881.1\|	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	beta-ureidopropionase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-ureidopropionase.	EC:3.5.1.6	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Pyrimidine metabolism	00240	87%
Blast2go	beta-Alanine metabolism	00410	87%
Blast2go	Pantothenate and CoA biosynthesis	00770	87%
Blast2go	Drug metabolism - other enzymes	00983	87%
Blast2go	Metabolic pathways	01100	87%

Source	GOs	Term	Type	Identity
Blast2go	uracil catabolic process	GO:0006212	Biological Process	87%
Blast2go	cellular response to nitrogen levels	GO:0043562	Biological Process	87%
Blast2go	beta-ureidopropionase activity	GO:0003837	Molecular Function	87%
Blast2go	cytosol	GO:0005829	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nitrilase/cyanide hydratase	IPR003010	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
18		66	33		0.997452
19		66		33	0.997452
313	14	85			0.993533
314	14	85			0.993533
315		85		14	0.993533
350	83	16			0.994512
353		83		16	0.994512
467	12			87	0.992554
469			87	12	0.992554
471	87			12	0.992554
579	75			25	0.996473
581		75		25	0.996473
673	25		75		0.996473
675	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain