SustainPineDB

Assembly Name: biogeco3 v1.0

UniGene Name: biog3_v1.0_unigene9357

Length: 892 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene biog3_v1.0_unigene9357 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7271	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	prolyl-tRNA synthetase [Arabidopsis thaliana] ref\|NP_850736.1\| prolyl-tRNA synthetase [Arabidopsis thaliana] emb\|CAB71872.1\| multifunctional aminoacyl-tRNA ligase-like protein [Arabidopsis thaliana] gb\|AAL24294.1\| multifunctional aminoacyl-tRNA ligase-lik	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	76%
Blast2go	protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Proline--tRNA ligase.	EC:6.1.1.15	-	0.0	84%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminoacyl-tRNA biosynthesis	00970		0.0	84%

Source	GOs	Term	Type	Identity
Blast2go	prolyl-tRNA aminoacylation	GO:0006433	Biological Process	84%
Blast2go	proline-tRNA ligase activity	GO:0004827	Molecular Function	84%
Blast2go	protein binding	GO:0005515	Molecular Function	84%
Blast2go	ATP binding	GO:0005524	Molecular Function	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	84%
Blast2go	membrane	GO:0016020	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	WHEP-TRS	IPR000738	-	-
Sma3	Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain	IPR002314	-	-
Sma3	Prolyl-tRNA synthetase, class IIa	IPR002316	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3	Anticodon-binding	IPR004154	-	-
Sma3	Prolyl-tRNA synthetase, class IIa, archaeal-type	IPR004499	-	-
Sma3	Aminoacyl-tRNA synthetase, class II	IPR006195	-	-
Sma3	YbaK/aminoacyl-tRNA synthetase-associated domain	IPR007214	-	-
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Prolyl-tRNA synthetase, class II, C-terminal	IPR016061	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7U2U2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 63 aas, your sequence is shorter than subject: 290 - 516

Fln protein: CRDLPLKINQWCNVVRWEFKHPTPFIRSREFLWQEGHTAFATKEEADEEVLAILELYRKIYEEFLAVPVIKGKKSEVEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFAKMFEIRFENERGERTMVWQNSWAYTTRTIGVMVMIHGDDKGLVLPPRVASLQIIVVPVPFKDADTHAIYNACIETVQTLRAAGFRIEEDIRDNYSPGWKYSHWELKGVPLRIEIGPRDIANKQVVVVRRDNFVKQNVPLDCLSSRIGELLEEIQKDMFERAKVKRDSCIVKAESWE*

Protein Length: 291

Fln nts: AATGTCGTGATCTTCCTCTGAAAATTAATCAGTGGTGCAATGTTGTGCGATGGGAGTTTAAGCATCCTACACCGTTTATCAGGAGTCGTGAGTTCCTTTGGCAAGAAGGTCATACCGCATTTGCCACCAAAGAAGAAGCCGACGAGGAGGTTCTTGCAATTTTGGAGCTATATCGCAAAATATATGAAGAATTCCTAGCAGTTCCTGTCATTAAAGGCAAGAAAAGTGAGGTAGAAAAGTTTGCTGGTGGCCTTTACACAACTACTGTTGAGGCATTTATTCCCAACACAGGACGTGGTATACAGGGTGCTACATCACATTGCCTTGGGCAGAACTTCGCAAAGATGTTTGAGATAAGATTTGAGAATGAGAGAGGAGAAAGGACTATGGTTTGGCAGAATTCATGGGCATACACTACTCGTACGATTGGTGTCATGGTAATGATTCATGGGGATGACAAAGGTCTGGTTTTGCCTCCTCGAGTAGCATCACTGCAAATTATTGTGGTTCCTGTTCCCTTCAAAGATGCAGACACACATGCAATTTATAATGCATGTATTGAGACAGTGCAGACATTGCGGGCAGCAGGATTTCGTATAGAAGAAGATATCCGAGACAATTATTCCCCTGGCTGGAAATATTCTCACTGGGAGCTTAAGGGTGTTCCTCTTCGCATTGAAATTGGCCCCAGGGATATAGCCAATAAGCAGGTTGTAGTTGTTCGTCGAGATAATTTTGTAAAACAAAATGTGCCTTTGGATTGCTTGAGCAGCCGTATTGGAGAACTTTTGGAAGAAATTCAAAAGGATATGTTTGAAAGGGCAAAGGTAAAAAGAGATTCGTGCATTGTGAAGGCTGAGAGTTGGGAATGAATTTATTAATTCCCTCAATA

Fln Alignment:

Contig9357___RDLPLKINQWCNVVRWEFKHPTPFIRSREFLWQEGHTAFATKEEADEEVLAILELYRKIYEEFLAVPVIKGKKSEVEKFAGGLYTTTVEAFIPNTGRGIQGATSHCLGQNFAKMFEIRFENERGERTMVWQNSWAYTTRTIGVMVMIHGDDKGLVLPPRVASLQIIVVPVPFKDADTHAIYNACIETVQTLRAAGFRIEEDIRDNYSPGWKYSHWELKGVPLRIEIGPRDIANKQVVVVRRDNFVKQNVPLDCLSSRIGELLEEIQKDMFERAKVKRDSCIVKAESWE
D7U2U2_________________RDLPLRLNQWCNVVRWEFSHPTPFIRSREFLWQEGHTAFATKEEADKEVLEILELYRRIYEEYLAIPVIKGKKSEMEKFAGGFYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFDITFENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVMPPKVASVQIIVVPVPFKDADTQAIFDACDATVNTLNEAGFRAEADLRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQARAVRRDNSAKIDIPIVNLVEQVKDMLDNIQQNLFDVAKQKRDACIKTVRTWD

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
230		66		33	0.997452
231	66		33		0.997452
232		66		33	0.997452
333	83		16		0.994512
406	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain